miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33324 5' -57.8 NC_007605.1 + 24740 0.66 0.830776
Target:  5'- -aGGUCUGGGGUGGcGaGCcugcugucucaggagGGGCCUggcUCCg -3'
miRNA:   3'- caUCAGAUCCCACU-C-CG---------------UCCGGA---GGG- -5'
33324 5' -57.8 NC_007605.1 + 15533 0.66 0.830776
Target:  5'- -aGGUCUGGGGUGGcGaGCcugcugucucaggagGGGCCUggcUCCg -3'
miRNA:   3'- caUCAGAUCCCACU-C-CG---------------UCCGGA---GGG- -5'
33324 5' -57.8 NC_007605.1 + 27809 0.66 0.830776
Target:  5'- -aGGUCUGGGGUGGcGaGCcugcugucucaggagGGGCCUggcUCCg -3'
miRNA:   3'- caUCAGAUCCCACU-C-CG---------------UCCGGA---GGG- -5'
33324 5' -57.8 NC_007605.1 + 33946 0.66 0.830776
Target:  5'- -aGGUCUGGGGUGGcGaGCcugcugucucaggagGGGCCUggcUCCg -3'
miRNA:   3'- caUCAGAUCCCACU-C-CG---------------UCCGGA---GGG- -5'
33324 5' -57.8 NC_007605.1 + 12464 0.66 0.830776
Target:  5'- -aGGUCUGGGGUGGcGaGCcugcugucucaggagGGGCCUggcUCCg -3'
miRNA:   3'- caUCAGAUCCCACU-C-CG---------------UCCGGA---GGG- -5'
33324 5' -57.8 NC_007605.1 + 30878 0.66 0.830776
Target:  5'- -aGGUCUGGGGUGGcGaGCcugcugucucaggagGGGCCUggcUCCg -3'
miRNA:   3'- caUCAGAUCCCACU-C-CG---------------UCCGGA---GGG- -5'
33324 5' -57.8 NC_007605.1 + 114849 0.66 0.827464
Target:  5'- -cGGcCUGGGGUaAGGUgaucgacuccAGGCC-CCCg -3'
miRNA:   3'- caUCaGAUCCCAcUCCG----------UCCGGaGGG- -5'
33324 5' -57.8 NC_007605.1 + 20161 0.66 0.827464
Target:  5'- aGUGGaC-AGGGgcgggagGGGGCuGGGCCUCaCCu -3'
miRNA:   3'- -CAUCaGaUCCCa------CUCCG-UCCGGAG-GG- -5'
33324 5' -57.8 NC_007605.1 + 45069 0.66 0.827464
Target:  5'- -cGGUCaAGGGUGuccuuggcguccGGGUGGGCC-CCg -3'
miRNA:   3'- caUCAGaUCCCAC------------UCCGUCCGGaGGg -5'
33324 5' -57.8 NC_007605.1 + 24789 0.67 0.818213
Target:  5'- gGUGGccCUGGGGUaagucuggGAGGCAgagggucGGCCUaggCCCg -3'
miRNA:   3'- -CAUCa-GAUCCCA--------CUCCGU-------CCGGA---GGG- -5'
33324 5' -57.8 NC_007605.1 + 12513 0.67 0.818213
Target:  5'- gGUGGccCUGGGGUaagucuggGAGGCAgagggucGGCCUaggCCCg -3'
miRNA:   3'- -CAUCa-GAUCCCA--------CUCCGU-------CCGGA---GGG- -5'
33324 5' -57.8 NC_007605.1 + 15582 0.67 0.818213
Target:  5'- gGUGGccCUGGGGUaagucuggGAGGCAgagggucGGCCUaggCCCg -3'
miRNA:   3'- -CAUCa-GAUCCCA--------CUCCGU-------CCGGA---GGG- -5'
33324 5' -57.8 NC_007605.1 + 18651 0.67 0.818213
Target:  5'- gGUGGccCUGGGGUaagucuggGAGGCAgagggucGGCCUaggCCCg -3'
miRNA:   3'- -CAUCa-GAUCCCA--------CUCCGU-------CCGGA---GGG- -5'
33324 5' -57.8 NC_007605.1 + 21720 0.67 0.818213
Target:  5'- gGUGGccCUGGGGUaagucuggGAGGCAgagggucGGCCUaggCCCg -3'
miRNA:   3'- -CAUCa-GAUCCCA--------CUCCGU-------CCGGA---GGG- -5'
33324 5' -57.8 NC_007605.1 + 33995 0.67 0.818213
Target:  5'- gGUGGccCUGGGGUaagucuggGAGGCAgagggucGGCCUaggCCCg -3'
miRNA:   3'- -CAUCa-GAUCCCA--------CUCCGU-------CCGGA---GGG- -5'
33324 5' -57.8 NC_007605.1 + 27858 0.67 0.818213
Target:  5'- gGUGGccCUGGGGUaagucuggGAGGCAgagggucGGCCUaggCCCg -3'
miRNA:   3'- -CAUCa-GAUCCCA--------CUCCGU-------CCGGA---GGG- -5'
33324 5' -57.8 NC_007605.1 + 24682 0.67 0.810496
Target:  5'- -gGGUCUucAGGGaUGGGGCuuGGCCgggUCUa -3'
miRNA:   3'- caUCAGA--UCCC-ACUCCGu-CCGGa--GGG- -5'
33324 5' -57.8 NC_007605.1 + 15475 0.67 0.810496
Target:  5'- -gGGUCUucAGGGaUGGGGCuuGGCCgggUCUa -3'
miRNA:   3'- caUCAGA--UCCC-ACUCCGu-CCGGa--GGG- -5'
33324 5' -57.8 NC_007605.1 + 27751 0.67 0.810496
Target:  5'- -gGGUCUucAGGGaUGGGGCuuGGCCgggUCUa -3'
miRNA:   3'- caUCAGA--UCCC-ACUCCGu-CCGGa--GGG- -5'
33324 5' -57.8 NC_007605.1 + 30820 0.67 0.810496
Target:  5'- -gGGUCUucAGGGaUGGGGCuuGGCCgggUCUa -3'
miRNA:   3'- caUCAGA--UCCC-ACUCCGu-CCGGa--GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.