miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33325 5' -55.7 NC_007605.1 + 126687 0.66 0.936348
Target:  5'- cCUGCCGGGaCGGucuCAACGUGuccugguuuaaGGCCgCAa -3'
miRNA:   3'- -GAUGGCUC-GUCu--GUUGCAC-----------CCGGaGU- -5'
33325 5' -55.7 NC_007605.1 + 59005 0.66 0.931365
Target:  5'- aUGCCGgcaaAGCGGcCAAacuugcaGUGGGCCUg- -3'
miRNA:   3'- gAUGGC----UCGUCuGUUg------CACCCGGAgu -5'
33325 5' -55.7 NC_007605.1 + 121456 0.66 0.931365
Target:  5'- cCUAUCGc-CAGACGGcCGUcccGGGCCUCu -3'
miRNA:   3'- -GAUGGCucGUCUGUU-GCA---CCCGGAGu -5'
33325 5' -55.7 NC_007605.1 + 91849 0.66 0.926145
Target:  5'- -cACCGGGCuucagGGGCAugGUcGGG-CUCGg -3'
miRNA:   3'- gaUGGCUCG-----UCUGUugCA-CCCgGAGU- -5'
33325 5' -55.7 NC_007605.1 + 100366 0.66 0.920687
Target:  5'- aUACuCGGGCugcuCAugccCGUGGGCCUCc -3'
miRNA:   3'- gAUG-GCUCGucu-GUu---GCACCCGGAGu -5'
33325 5' -55.7 NC_007605.1 + 99180 0.66 0.920687
Target:  5'- -cGCCGGuCAGGgGAC--GGGCCUCAg -3'
miRNA:   3'- gaUGGCUcGUCUgUUGcaCCCGGAGU- -5'
33325 5' -55.7 NC_007605.1 + 59719 0.66 0.920687
Target:  5'- -gGCCG-GCAcGAgGugGUGGGUCUgGa -3'
miRNA:   3'- gaUGGCuCGU-CUgUugCACCCGGAgU- -5'
33325 5' -55.7 NC_007605.1 + 129410 0.66 0.914992
Target:  5'- -gGCCGAG-AGAagcacaGAUGUGGcGCCUCc -3'
miRNA:   3'- gaUGGCUCgUCUg-----UUGCACC-CGGAGu -5'
33325 5' -55.7 NC_007605.1 + 51791 0.67 0.902895
Target:  5'- uCUGCCGGacguGCAGuucuacuuUAACGcggccgGGGCCUCAc -3'
miRNA:   3'- -GAUGGCU----CGUCu-------GUUGCa-----CCCGGAGU- -5'
33325 5' -55.7 NC_007605.1 + 123127 0.67 0.899084
Target:  5'- -gGCCGGGuCAGAUguugugggggaugagAGCGUGGGUCa-- -3'
miRNA:   3'- gaUGGCUC-GUCUG---------------UUGCACCCGGagu -5'
33325 5' -55.7 NC_007605.1 + 57476 0.67 0.883017
Target:  5'- -aGCCGgggcGGCuGAUGGCGUGGGCUg-- -3'
miRNA:   3'- gaUGGC----UCGuCUGUUGCACCCGGagu -5'
33325 5' -55.7 NC_007605.1 + 135406 0.67 0.875944
Target:  5'- uUACCGGGCccuGGCccGgGUGGGCUUCc -3'
miRNA:   3'- gAUGGCUCGu--CUGu-UgCACCCGGAGu -5'
33325 5' -55.7 NC_007605.1 + 105789 0.67 0.875944
Target:  5'- -cGCCccuGGCAGACGcccuCcUGGGCCUCGa -3'
miRNA:   3'- gaUGGc--UCGUCUGUu---GcACCCGGAGU- -5'
33325 5' -55.7 NC_007605.1 + 106468 0.68 0.861152
Target:  5'- -cGCCaGGGUGGAgGAUGagcaGGGCCUCAu -3'
miRNA:   3'- gaUGG-CUCGUCUgUUGCa---CCCGGAGU- -5'
33325 5' -55.7 NC_007605.1 + 105850 0.68 0.853444
Target:  5'- -cACCGGGCGccacACAGCGaGGGUCUCc -3'
miRNA:   3'- gaUGGCUCGUc---UGUUGCaCCCGGAGu -5'
33325 5' -55.7 NC_007605.1 + 153409 0.68 0.845538
Target:  5'- -cGCCGAGCGGcACGGCGUucccGuGGCCg-- -3'
miRNA:   3'- gaUGGCUCGUC-UGUUGCA----C-CCGGagu -5'
33325 5' -55.7 NC_007605.1 + 91737 0.68 0.837438
Target:  5'- -gGCCc-GCAGGC-GCG-GGGCCUCGg -3'
miRNA:   3'- gaUGGcuCGUCUGuUGCaCCCGGAGU- -5'
33325 5' -55.7 NC_007605.1 + 159759 0.69 0.812057
Target:  5'- -aACCGAGCcauGCAGCGguUGGGCCg-- -3'
miRNA:   3'- gaUGGCUCGuc-UGUUGC--ACCCGGagu -5'
33325 5' -55.7 NC_007605.1 + 150611 0.69 0.803261
Target:  5'- cCUcCCGGGCGGugGGCGgcccGGGCUcCAg -3'
miRNA:   3'- -GAuGGCUCGUCugUUGCa---CCCGGaGU- -5'
33325 5' -55.7 NC_007605.1 + 95299 0.69 0.803261
Target:  5'- aUACUGGGgAGACGGCGgGGGagguuuCCUCAg -3'
miRNA:   3'- gAUGGCUCgUCUGUUGCaCCC------GGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.