miRNA display CGI


Results 21 - 40 of 436 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33327 3' -61.3 NC_007605.1 + 77184 0.66 0.745501
Target:  5'- cCCGGGAGCGGGAGCgggcacGUCgGGuGGCgUUg -3'
miRNA:   3'- -GGCCCUCGUUCUCG------CGGgUC-UCGgGG- -5'
33327 3' -61.3 NC_007605.1 + 141443 0.66 0.745501
Target:  5'- cCCGGuGGGCcacccGGcCGCCCcccGAGCUCCa -3'
miRNA:   3'- -GGCC-CUCGuuc--UC-GCGGGu--CUCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 143277 0.66 0.745501
Target:  5'- cCCGGuGGGCcacccGGcCGCCCcccGAGCUCCa -3'
miRNA:   3'- -GGCC-CUCGuuc--UC-GCGGGu--CUCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 141137 0.66 0.745501
Target:  5'- cCCGGuGGGCcacccGGcCGCCCcccGAGCUCCa -3'
miRNA:   3'- -GGCC-CUCGuuc--UC-GCGGGu--CUCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 141239 0.66 0.745501
Target:  5'- cCCGGuGGGCcacccGGcCGCCCcccGAGCUCCa -3'
miRNA:   3'- -GGCC-CUCGuuc--UC-GCGGGu--CUCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 143073 0.66 0.745501
Target:  5'- cCCGGuGGGCcacccGGcCGCCCcccGAGCUCCa -3'
miRNA:   3'- -GGCC-CUCGuuc--UC-GCGGGu--CUCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 140933 0.66 0.745501
Target:  5'- cCCGGuGGGCcacccGGcCGCCCcccGAGCUCCa -3'
miRNA:   3'- -GGCC-CUCGuuc--UC-GCGGGu--CUCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 142462 0.66 0.745501
Target:  5'- cCCGGuGGGCcacccGGcCGCCCcccGAGCUCCa -3'
miRNA:   3'- -GGCC-CUCGuuc--UC-GCGGGu--CUCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 141851 0.66 0.745501
Target:  5'- cCCGGuGGGCcacccGGcCGCCCcccGAGCUCCa -3'
miRNA:   3'- -GGCC-CUCGuuc--UC-GCGGGu--CUCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 143175 0.66 0.745501
Target:  5'- cCCGGuGGGCcacccGGcCGCCCcccGAGCUCCa -3'
miRNA:   3'- -GGCC-CUCGuuc--UC-GCGGGu--CUCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 142971 0.66 0.745501
Target:  5'- cCCGGuGGGCcacccGGcCGCCCcccGAGCUCCa -3'
miRNA:   3'- -GGCC-CUCGuuc--UC-GCGGGu--CUCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 87964 0.66 0.744577
Target:  5'- cCCGcG-GCAGGAG-GCCCcgcggcaGGAGgCCCCa -3'
miRNA:   3'- -GGCcCuCGUUCUCgCGGG-------UCUC-GGGG- -5'
33327 3' -61.3 NC_007605.1 + 159687 0.66 0.744577
Target:  5'- gCUGGG-GCAcgAGAGCccggcccGUCCGGcGCCCUc -3'
miRNA:   3'- -GGCCCuCGU--UCUCG-------CGGGUCuCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 37581 0.66 0.739945
Target:  5'- aCGGGGGCGgcauuggaugggccaGGAGUuggugaGUCCccAGCCCCu -3'
miRNA:   3'- gGCCCUCGU---------------UCUCG------CGGGucUCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 159950 0.66 0.739945
Target:  5'- gCGGGGGCAAGGcugacucaccuguuuGaCGCCguG-GCuCCCg -3'
miRNA:   3'- gGCCCUCGUUCU---------------C-GCGGguCuCG-GGG- -5'
33327 3' -61.3 NC_007605.1 + 51512 0.66 0.737155
Target:  5'- -gGGGAGCAcuacugcugaaucugAG-GCcucuggcccucccaGCCCacAGAGCCCCc -3'
miRNA:   3'- ggCCCUCGU---------------UCuCG--------------CGGG--UCUCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 31769 0.66 0.736223
Target:  5'- gUGGG-GCuggacuuGAGgGCCCAaagaGGCCCCu -3'
miRNA:   3'- gGCCCuCGuu-----CUCgCGGGUc---UCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 74378 0.66 0.736223
Target:  5'- gCGGGGGCccu-GCGCUCGcucacGCCCCu -3'
miRNA:   3'- gGCCCUCGuucuCGCGGGUcu---CGGGG- -5'
33327 3' -61.3 NC_007605.1 + 34838 0.66 0.736223
Target:  5'- gUGGG-GCuggacuuGAGgGCCCAaagaGGCCCCu -3'
miRNA:   3'- gGCCCuCGuu-----CUCgCGGGUc---UCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 3250 0.66 0.736223
Target:  5'- aCUGGG-GCccgGGGGGCGCgCGuAGCCCg -3'
miRNA:   3'- -GGCCCuCG---UUCUCGCGgGUcUCGGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.