miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33329 3' -62.4 NC_007605.1 + 12755 0.66 0.673036
Target:  5'- gGCCCcGCGC---CUgGCGCCuCCUCGg -3'
miRNA:   3'- -CGGGaCGCGagcGAgUGCGG-GGAGCa -5'
33329 3' -62.4 NC_007605.1 + 21961 0.66 0.673036
Target:  5'- gGCCCcGCGC---CUgGCGCCuCCUCGg -3'
miRNA:   3'- -CGGGaCGCGagcGAgUGCGG-GGAGCa -5'
33329 3' -62.4 NC_007605.1 + 18893 0.66 0.673036
Target:  5'- gGCCCcGCGC---CUgGCGCCuCCUCGg -3'
miRNA:   3'- -CGGGaCGCGagcGAgUGCGG-GGAGCa -5'
33329 3' -62.4 NC_007605.1 + 15824 0.66 0.673036
Target:  5'- gGCCCcGCGC---CUgGCGCCuCCUCGg -3'
miRNA:   3'- -CGGGaCGCGagcGAgUGCGG-GGAGCa -5'
33329 3' -62.4 NC_007605.1 + 28099 0.66 0.673036
Target:  5'- gGCCCcGCGC---CUgGCGCCuCCUCGg -3'
miRNA:   3'- -CGGGaCGCGagcGAgUGCGG-GGAGCa -5'
33329 3' -62.4 NC_007605.1 + 25030 0.66 0.673036
Target:  5'- gGCCCcGCGC---CUgGCGCCuCCUCGg -3'
miRNA:   3'- -CGGGaCGCGagcGAgUGCGG-GGAGCa -5'
33329 3' -62.4 NC_007605.1 + 31168 0.66 0.673036
Target:  5'- gGCCCcGCGC---CUgGCGCCuCCUCGg -3'
miRNA:   3'- -CGGGaCGCGagcGAgUGCGG-GGAGCa -5'
33329 3' -62.4 NC_007605.1 + 34237 0.66 0.673036
Target:  5'- gGCCCcGCGC---CUgGCGCCuCCUCGg -3'
miRNA:   3'- -CGGGaCGCGagcGAgUGCGG-GGAGCa -5'
33329 3' -62.4 NC_007605.1 + 128589 0.66 0.673036
Target:  5'- uGCCaugGUGCcaaGCUCA-GCCCCUUGg -3'
miRNA:   3'- -CGGga-CGCGag-CGAGUgCGGGGAGCa -5'
33329 3' -62.4 NC_007605.1 + 154643 0.66 0.643898
Target:  5'- aGUCCUGCacgcaguacauGCcgagcCGCcUGCGCCCCUCGg -3'
miRNA:   3'- -CGGGACG-----------CGa----GCGaGUGCGGGGAGCa -5'
33329 3' -62.4 NC_007605.1 + 54476 0.66 0.643898
Target:  5'- gGCCCcgGcCGCUUcCUC-CGCUCCUCGc -3'
miRNA:   3'- -CGGGa-C-GCGAGcGAGuGCGGGGAGCa -5'
33329 3' -62.4 NC_007605.1 + 159968 0.67 0.614684
Target:  5'- uGUCCaGCGCUCuGgUCGC-CCCCUCu- -3'
miRNA:   3'- -CGGGaCGCGAG-CgAGUGcGGGGAGca -5'
33329 3' -62.4 NC_007605.1 + 71244 0.67 0.604961
Target:  5'- uCCUUGUGCUCcuGC-CG-GCCCCUCGa -3'
miRNA:   3'- cGGGACGCGAG--CGaGUgCGGGGAGCa -5'
33329 3' -62.4 NC_007605.1 + 157882 0.67 0.595256
Target:  5'- gGCUCgGCGUUCGCcuugCGgguuCGUCCCUCGg -3'
miRNA:   3'- -CGGGaCGCGAGCGa---GU----GCGGGGAGCa -5'
33329 3' -62.4 NC_007605.1 + 148758 0.67 0.585575
Target:  5'- aGCCCuUGcCGCUCcccgcauuccuGCUUucgGCGCCCCUgCGg -3'
miRNA:   3'- -CGGG-AC-GCGAG-----------CGAG---UGCGGGGA-GCa -5'
33329 3' -62.4 NC_007605.1 + 124689 0.68 0.537743
Target:  5'- cGUCCUGagugugaaGCuUCGC-CAUGCCCCUCc- -3'
miRNA:   3'- -CGGGACg-------CG-AGCGaGUGCGGGGAGca -5'
33329 3' -62.4 NC_007605.1 + 151100 0.68 0.518974
Target:  5'- cCCCUGgGCggcCGCagCcUGCCCCUCGg -3'
miRNA:   3'- cGGGACgCGa--GCGa-GuGCGGGGAGCa -5'
33329 3' -62.4 NC_007605.1 + 162971 0.69 0.500469
Target:  5'- uCCCaUGUGCUCGCUCugcgagggccGgGCCCCggcCGUg -3'
miRNA:   3'- cGGG-ACGCGAGCGAG----------UgCGGGGa--GCA- -5'
33329 3' -62.4 NC_007605.1 + 134123 0.69 0.45557
Target:  5'- gGCCCUGaUGCUCGuCUaCACGCUCUgCGa -3'
miRNA:   3'- -CGGGAC-GCGAGC-GA-GUGCGGGGaGCa -5'
33329 3' -62.4 NC_007605.1 + 169847 0.7 0.446851
Target:  5'- cGCauggCUGCGCcCGCgCGCGCCCCcCGa -3'
miRNA:   3'- -CGg---GACGCGaGCGaGUGCGGGGaGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.