miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33329 5' -50.3 NC_007605.1 + 130430 0.66 0.996783
Target:  5'- gCAUGCUuAGUGCcccccuUGAGAAGCAGCUc -3'
miRNA:   3'- aGUGUGAcUCGCG------AUUCUUUGUCGGu -5'
33329 5' -50.3 NC_007605.1 + 70847 0.66 0.996207
Target:  5'- -gACcCUGAGCaGCUcauauguGAAGCAGCCc -3'
miRNA:   3'- agUGuGACUCG-CGAuu-----CUUUGUCGGu -5'
33329 5' -50.3 NC_007605.1 + 56233 0.66 0.996207
Target:  5'- -gGCACUGAG-GCggcGGGAGgGGCCc -3'
miRNA:   3'- agUGUGACUCgCGau-UCUUUgUCGGu -5'
33329 5' -50.3 NC_007605.1 + 118345 0.66 0.996018
Target:  5'- aCAacuGCUGAGCuUcccaccguuccagaUGAGAGGCAGCCAu -3'
miRNA:   3'- aGUg--UGACUCGcG--------------AUUCUUUGUCGGU- -5'
33329 5' -50.3 NC_007605.1 + 51216 0.66 0.995549
Target:  5'- gUCACGuccCgggGGGaggaGgUAGGAGACAGCCAg -3'
miRNA:   3'- -AGUGU---Ga--CUCg---CgAUUCUUUGUCGGU- -5'
33329 5' -50.3 NC_007605.1 + 73102 0.66 0.995549
Target:  5'- gUACACUGGG-GUgUAGGAGAgGGCCc -3'
miRNA:   3'- aGUGUGACUCgCG-AUUCUUUgUCGGu -5'
33329 5' -50.3 NC_007605.1 + 137095 0.66 0.995549
Target:  5'- cCACGauccCUGAG-GC--GGGAGCAGCCGg -3'
miRNA:   3'- aGUGU----GACUCgCGauUCUUUGUCGGU- -5'
33329 5' -50.3 NC_007605.1 + 114585 0.66 0.995111
Target:  5'- aCGCAgUGcccgucaguuccaagGGCuacuaGCUGGGAAGCAGCCc -3'
miRNA:   3'- aGUGUgAC---------------UCG-----CGAUUCUUUGUCGGu -5'
33329 5' -50.3 NC_007605.1 + 67197 0.67 0.991928
Target:  5'- uUCGCACUGcGGUGgaGguAGAGACuGCCu -3'
miRNA:   3'- -AGUGUGAC-UCGCgaU--UCUUUGuCGGu -5'
33329 5' -50.3 NC_007605.1 + 81794 0.67 0.991928
Target:  5'- aCAgGCU-AGUGUUGAGguGCAGCCc -3'
miRNA:   3'- aGUgUGAcUCGCGAUUCuuUGUCGGu -5'
33329 5' -50.3 NC_007605.1 + 51177 0.67 0.991928
Target:  5'- cCugGgaGAGUGau-GGggGCGGCCAa -3'
miRNA:   3'- aGugUgaCUCGCgauUCuuUGUCGGU- -5'
33329 5' -50.3 NC_007605.1 + 54677 0.67 0.989399
Target:  5'- -aGgGCgagGAGCGg-AGGAAGCGGCCGg -3'
miRNA:   3'- agUgUGa--CUCGCgaUUCUUUGUCGGU- -5'
33329 5' -50.3 NC_007605.1 + 9717 0.67 0.989399
Target:  5'- gCAC-CUGAGUGUgGAGguACAGaCCAa -3'
miRNA:   3'- aGUGuGACUCGCGaUUCuuUGUC-GGU- -5'
33329 5' -50.3 NC_007605.1 + 161008 0.67 0.987922
Target:  5'- -gACGCUGucCGCcaggacgGAGAAGCGGCCc -3'
miRNA:   3'- agUGUGACucGCGa------UUCUUUGUCGGu -5'
33329 5' -50.3 NC_007605.1 + 159647 0.67 0.987922
Target:  5'- aCGCGCUcaAGCGC-AAGGAGCAGUa- -3'
miRNA:   3'- aGUGUGAc-UCGCGaUUCUUUGUCGgu -5'
33329 5' -50.3 NC_007605.1 + 52888 0.67 0.98629
Target:  5'- -gGCGCUGGGCGggcGGAAGCuacacuGGCCAg -3'
miRNA:   3'- agUGUGACUCGCgauUCUUUG------UCGGU- -5'
33329 5' -50.3 NC_007605.1 + 7171 0.67 0.98629
Target:  5'- cCGCACUGAGCGUUGGcguguguccGAaaccacuagggcAACGGCUg -3'
miRNA:   3'- aGUGUGACUCGCGAUU---------CU------------UUGUCGGu -5'
33329 5' -50.3 NC_007605.1 + 12336 0.68 0.984494
Target:  5'- --gUACUGGGUGCaGGGggGCAGgCGg -3'
miRNA:   3'- aguGUGACUCGCGaUUCuuUGUCgGU- -5'
33329 5' -50.3 NC_007605.1 + 18474 0.68 0.984494
Target:  5'- --gUACUGGGUGCaGGGggGCAGgCGg -3'
miRNA:   3'- aguGUGACUCGCGaUUCuuUGUCgGU- -5'
33329 5' -50.3 NC_007605.1 + 24612 0.68 0.984494
Target:  5'- --gUACUGGGUGCaGGGggGCAGgCGg -3'
miRNA:   3'- aguGUGACUCGCGaUUCuuUGUCgGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.