miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33330 3' -56.8 NC_007605.1 + 61133 0.66 0.910077
Target:  5'- ----cGUUuggCCGGC-CCUCAGGGAccgGCa -3'
miRNA:   3'- guuucCAGa--GGCCGaGGAGUCCCU---CG- -5'
33330 3' -56.8 NC_007605.1 + 120305 0.66 0.910077
Target:  5'- cCAAGGGgCcCUGGCaCCUCcGGGAGg -3'
miRNA:   3'- -GUUUCCaGaGGCCGaGGAGuCCCUCg -5'
33330 3' -56.8 NC_007605.1 + 721 0.66 0.897711
Target:  5'- ----cGUcCUCUGGCUCuCUucgcCAGGGGGCc -3'
miRNA:   3'- guuucCA-GAGGCCGAG-GA----GUCCCUCG- -5'
33330 3' -56.8 NC_007605.1 + 5871 0.66 0.897711
Target:  5'- gGAAGGUgaCUGGUcaCUCGGaGGGGCg -3'
miRNA:   3'- gUUUCCAgaGGCCGagGAGUC-CCUCG- -5'
33330 3' -56.8 NC_007605.1 + 164003 0.66 0.897711
Target:  5'- --cGGGUCUCgaGGC-CCUCuguggcgagaccAGGGAGg -3'
miRNA:   3'- guuUCCAGAGg-CCGaGGAG------------UCCCUCg -5'
33330 3' -56.8 NC_007605.1 + 24872 0.66 0.891188
Target:  5'- ------aCUCCGGgcgcCUCCUCGGGGccAGCu -3'
miRNA:   3'- guuuccaGAGGCC----GAGGAGUCCC--UCG- -5'
33330 3' -56.8 NC_007605.1 + 27941 0.66 0.891188
Target:  5'- ------aCUCCGGgcgcCUCCUCGGGGccAGCu -3'
miRNA:   3'- guuuccaGAGGCC----GAGGAGUCCC--UCG- -5'
33330 3' -56.8 NC_007605.1 + 87605 0.66 0.891188
Target:  5'- gGAAGGgC-CCGGCcUUUCAGGGGuGCu -3'
miRNA:   3'- gUUUCCaGaGGCCGaGGAGUCCCU-CG- -5'
33330 3' -56.8 NC_007605.1 + 12596 0.66 0.891188
Target:  5'- ------aCUCCGGgcgcCUCCUCGGGGccAGCu -3'
miRNA:   3'- guuuccaGAGGCC----GAGGAGUCCC--UCG- -5'
33330 3' -56.8 NC_007605.1 + 75363 0.66 0.891188
Target:  5'- cCAGAGuG-CUCCGGCUgCCgcacCAcGGGAGg -3'
miRNA:   3'- -GUUUC-CaGAGGCCGA-GGa---GU-CCCUCg -5'
33330 3' -56.8 NC_007605.1 + 18734 0.66 0.891188
Target:  5'- ------aCUCCGGgcgcCUCCUCGGGGccAGCu -3'
miRNA:   3'- guuuccaGAGGCC----GAGGAGUCCC--UCG- -5'
33330 3' -56.8 NC_007605.1 + 15665 0.66 0.891188
Target:  5'- ------aCUCCGGgcgcCUCCUCGGGGccAGCu -3'
miRNA:   3'- guuuccaGAGGCC----GAGGAGUCCC--UCG- -5'
33330 3' -56.8 NC_007605.1 + 34079 0.66 0.891188
Target:  5'- ------aCUCCGGgcgcCUCCUCGGGGccAGCu -3'
miRNA:   3'- guuuccaGAGGCC----GAGGAGUCCC--UCG- -5'
33330 3' -56.8 NC_007605.1 + 31010 0.66 0.891188
Target:  5'- ------aCUCCGGgcgcCUCCUCGGGGccAGCu -3'
miRNA:   3'- guuuccaGAGGCC----GAGGAGUCCC--UCG- -5'
33330 3' -56.8 NC_007605.1 + 21803 0.66 0.891188
Target:  5'- ------aCUCCGGgcgcCUCCUCGGGGccAGCu -3'
miRNA:   3'- guuuccaGAGGCC----GAGGAGUCCC--UCG- -5'
33330 3' -56.8 NC_007605.1 + 120030 0.66 0.87748
Target:  5'- -uAAGG-CUCCGGCcccacgaCCUC-GGGAGg -3'
miRNA:   3'- guUUCCaGAGGCCGa------GGAGuCCCUCg -5'
33330 3' -56.8 NC_007605.1 + 167987 0.66 0.87748
Target:  5'- uGGGGGUCcgucgCCGGCUCCacUCAc-GAGCa -3'
miRNA:   3'- gUUUCCAGa----GGCCGAGG--AGUccCUCG- -5'
33330 3' -56.8 NC_007605.1 + 142705 0.66 0.87748
Target:  5'- --uGGGUCcgcUCCccGCUCCggCGGGGGGUg -3'
miRNA:   3'- guuUCCAG---AGGc-CGAGGa-GUCCCUCG- -5'
33330 3' -56.8 NC_007605.1 + 21937 0.66 0.876061
Target:  5'- --cGGGUCUcggccagccgagcgaCCGGCcccgcgccuggcgccUCCUCGGGGccAGCc -3'
miRNA:   3'- guuUCCAGA---------------GGCCG---------------AGGAGUCCC--UCG- -5'
33330 3' -56.8 NC_007605.1 + 164549 0.67 0.873199
Target:  5'- --cAGGccagCUCCGcGUacagcuuccuauccuUCCUCAGGGAGg -3'
miRNA:   3'- guuUCCa---GAGGC-CG---------------AGGAGUCCCUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.