miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33330 3' -56.8 NC_007605.1 + 74833 1.11 0.002114
Target:  5'- uCAAAGGUCUCCGGCUCCUCAGGGAGCu -3'
miRNA:   3'- -GUUUCCAGAGGCCGAGGAGUCCCUCG- -5'
33330 3' -56.8 NC_007605.1 + 74053 0.86 0.089477
Target:  5'- gGGAGGUCUuuGGCUCCUCGGcaugggcGGAGCa -3'
miRNA:   3'- gUUUCCAGAggCCGAGGAGUC-------CCUCG- -5'
33330 3' -56.8 NC_007605.1 + 24939 0.74 0.493493
Target:  5'- -cAGGGUCuccagcagggUCCGGCaUCUUCAGGG-GCa -3'
miRNA:   3'- guUUCCAG----------AGGCCG-AGGAGUCCCuCG- -5'
33330 3' -56.8 NC_007605.1 + 34145 0.73 0.503004
Target:  5'- -cAGGGUCUCCaGGCaggguccggcaUCUUCAGGG-GCa -3'
miRNA:   3'- guUUCCAGAGG-CCG-----------AGGAGUCCCuCG- -5'
33330 3' -56.8 NC_007605.1 + 31076 0.73 0.503004
Target:  5'- -cAGGGUCUCCaGGCaggguccggcaUCUUCAGGG-GCa -3'
miRNA:   3'- guUUCCAGAGG-CCG-----------AGGAGUCCCuCG- -5'
33330 3' -56.8 NC_007605.1 + 28007 0.73 0.503004
Target:  5'- -cAGGGUCUCCaGGCaggguccggcaUCUUCAGGG-GCa -3'
miRNA:   3'- guUUCCAGAGG-CCG-----------AGGAGUCCCuCG- -5'
33330 3' -56.8 NC_007605.1 + 21870 0.73 0.503004
Target:  5'- -cAGGGUCUCCaGGCaggguccggcaUCUUCAGGG-GCa -3'
miRNA:   3'- guUUCCAGAGG-CCG-----------AGGAGUCCCuCG- -5'
33330 3' -56.8 NC_007605.1 + 18801 0.73 0.503004
Target:  5'- -cAGGGUCUCCaGGCaggguccggcaUCUUCAGGG-GCa -3'
miRNA:   3'- guUUCCAGAGG-CCG-----------AGGAGUCCCuCG- -5'
33330 3' -56.8 NC_007605.1 + 15732 0.73 0.503004
Target:  5'- -cAGGGUCUCCaGGCaggguccggcaUCUUCAGGG-GCa -3'
miRNA:   3'- guUUCCAGAGG-CCG-----------AGGAGUCCCuCG- -5'
33330 3' -56.8 NC_007605.1 + 12663 0.73 0.503004
Target:  5'- -cAGGGUCUCCaGGCaggguccggcaUCUUCAGGG-GCa -3'
miRNA:   3'- guUUCCAGAGG-CCG-----------AGGAGUCCCuCG- -5'
33330 3' -56.8 NC_007605.1 + 34444 0.72 0.561565
Target:  5'- cCAGAGGUCaggGGCaCCUCAGGGuGCc -3'
miRNA:   3'- -GUUUCCAGaggCCGaGGAGUCCCuCG- -5'
33330 3' -56.8 NC_007605.1 + 31375 0.72 0.561565
Target:  5'- cCAGAGGUCaggGGCaCCUCAGGGuGCc -3'
miRNA:   3'- -GUUUCCAGaggCCGaGGAGUCCCuCG- -5'
33330 3' -56.8 NC_007605.1 + 28306 0.72 0.561565
Target:  5'- cCAGAGGUCaggGGCaCCUCAGGGuGCc -3'
miRNA:   3'- -GUUUCCAGaggCCGaGGAGUCCCuCG- -5'
33330 3' -56.8 NC_007605.1 + 25237 0.72 0.561565
Target:  5'- cCAGAGGUCaggGGCaCCUCAGGGuGCc -3'
miRNA:   3'- -GUUUCCAGaggCCGaGGAGUCCCuCG- -5'
33330 3' -56.8 NC_007605.1 + 22168 0.72 0.561565
Target:  5'- cCAGAGGUCaggGGCaCCUCAGGGuGCc -3'
miRNA:   3'- -GUUUCCAGaggCCGaGGAGUCCCuCG- -5'
33330 3' -56.8 NC_007605.1 + 19099 0.72 0.561565
Target:  5'- cCAGAGGUCaggGGCaCCUCAGGGuGCc -3'
miRNA:   3'- -GUUUCCAGaggCCGaGGAGUCCCuCG- -5'
33330 3' -56.8 NC_007605.1 + 16030 0.72 0.561565
Target:  5'- cCAGAGGUCaggGGCaCCUCAGGGuGCc -3'
miRNA:   3'- -GUUUCCAGaggCCGaGGAGUCCCuCG- -5'
33330 3' -56.8 NC_007605.1 + 60430 0.72 0.561565
Target:  5'- ---uGGUg-CCGGC-CCUCAGGGAGa -3'
miRNA:   3'- guuuCCAgaGGCCGaGGAGUCCCUCg -5'
33330 3' -56.8 NC_007605.1 + 12962 0.72 0.571526
Target:  5'- cCAGAGGUCag-GGCaCCUCAGGGuGCc -3'
miRNA:   3'- -GUUUCCAGaggCCGaGGAGUCCCuCG- -5'
33330 3' -56.8 NC_007605.1 + 85178 0.72 0.601632
Target:  5'- -uGAGGugccacccguUCcCCGGCagaggCCUCGGGGGGCg -3'
miRNA:   3'- guUUCC----------AGaGGCCGa----GGAGUCCCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.