miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33330 3' -56.8 NC_007605.1 + 721 0.66 0.897711
Target:  5'- ----cGUcCUCUGGCUCuCUucgcCAGGGGGCc -3'
miRNA:   3'- guuucCA-GAGGCCGAG-GA----GUCCCUCG- -5'
33330 3' -56.8 NC_007605.1 + 5871 0.66 0.897711
Target:  5'- gGAAGGUgaCUGGUcaCUCGGaGGGGCg -3'
miRNA:   3'- gUUUCCAgaGGCCGagGAGUC-CCUCG- -5'
33330 3' -56.8 NC_007605.1 + 12344 0.71 0.621824
Target:  5'- -cGAGGUCccagcacCCGGUcCCUcCGGGGGGCa -3'
miRNA:   3'- guUUCCAGa------GGCCGaGGA-GUCCCUCG- -5'
33330 3' -56.8 NC_007605.1 + 12596 0.66 0.891188
Target:  5'- ------aCUCCGGgcgcCUCCUCGGGGccAGCu -3'
miRNA:   3'- guuuccaGAGGCC----GAGGAGUCCC--UCG- -5'
33330 3' -56.8 NC_007605.1 + 12663 0.73 0.503004
Target:  5'- -cAGGGUCUCCaGGCaggguccggcaUCUUCAGGG-GCa -3'
miRNA:   3'- guUUCCAGAGG-CCG-----------AGGAGUCCCuCG- -5'
33330 3' -56.8 NC_007605.1 + 12962 0.72 0.571526
Target:  5'- cCAGAGGUCag-GGCaCCUCAGGGuGCc -3'
miRNA:   3'- -GUUUCCAGaggCCGaGGAGUCCCuCG- -5'
33330 3' -56.8 NC_007605.1 + 13011 0.7 0.712156
Target:  5'- -cGAGGUCcCUGGUUCCUCugaaggacagagAGaGGGGCa -3'
miRNA:   3'- guUUCCAGaGGCCGAGGAG------------UC-CCUCG- -5'
33330 3' -56.8 NC_007605.1 + 13192 0.69 0.769761
Target:  5'- -cGGGGUCccUCCGGCUggCCUgggaccCGGGGAGg -3'
miRNA:   3'- guUUCCAG--AGGCCGA--GGA------GUCCCUCg -5'
33330 3' -56.8 NC_007605.1 + 13486 0.68 0.797068
Target:  5'- -cGGGGUCccUCCGGCUggCCUgguggaccCGGGGAGg -3'
miRNA:   3'- guUUCCAG--AGGCCGA--GGA--------GUCCCUCg -5'
33330 3' -56.8 NC_007605.1 + 13950 0.67 0.862917
Target:  5'- cCGGGGGUCgggCUGGg-CCgccaGGGGGGCa -3'
miRNA:   3'- -GUUUCCAGa--GGCCgaGGag--UCCCUCG- -5'
33330 3' -56.8 NC_007605.1 + 15413 0.71 0.621824
Target:  5'- -cGAGGUCccagcacCCGGUcCCUcCGGGGGGCa -3'
miRNA:   3'- guUUCCAGa------GGCCGaGGA-GUCCCUCG- -5'
33330 3' -56.8 NC_007605.1 + 15665 0.66 0.891188
Target:  5'- ------aCUCCGGgcgcCUCCUCGGGGccAGCu -3'
miRNA:   3'- guuuccaGAGGCC----GAGGAGUCCC--UCG- -5'
33330 3' -56.8 NC_007605.1 + 15732 0.73 0.503004
Target:  5'- -cAGGGUCUCCaGGCaggguccggcaUCUUCAGGG-GCa -3'
miRNA:   3'- guUUCCAGAGG-CCG-----------AGGAGUCCCuCG- -5'
33330 3' -56.8 NC_007605.1 + 16030 0.72 0.561565
Target:  5'- cCAGAGGUCaggGGCaCCUCAGGGuGCc -3'
miRNA:   3'- -GUUUCCAGaggCCGaGGAGUCCCuCG- -5'
33330 3' -56.8 NC_007605.1 + 16080 0.7 0.712156
Target:  5'- -cGAGGUCcCUGGUUCCUCugaaggacagagAGaGGGGCa -3'
miRNA:   3'- guUUCCAGaGGCCGAGGAG------------UC-CCUCG- -5'
33330 3' -56.8 NC_007605.1 + 16261 0.69 0.769761
Target:  5'- -cGGGGUCccUCCGGCUggCCUgggaccCGGGGAGg -3'
miRNA:   3'- guUUCCAG--AGGCCGA--GGA------GUCCCUCg -5'
33330 3' -56.8 NC_007605.1 + 16555 0.68 0.797068
Target:  5'- -cGGGGUCccUCCGGCUggCCUgguggaccCGGGGAGg -3'
miRNA:   3'- guUUCCAG--AGGCCGA--GGA--------GUCCCUCg -5'
33330 3' -56.8 NC_007605.1 + 17019 0.67 0.862917
Target:  5'- cCGGGGGUCgggCUGGg-CCgccaGGGGGGCa -3'
miRNA:   3'- -GUUUCCAGa--GGCCgaGGag--UCCCUCG- -5'
33330 3' -56.8 NC_007605.1 + 18482 0.71 0.621824
Target:  5'- -cGAGGUCccagcacCCGGUcCCUcCGGGGGGCa -3'
miRNA:   3'- guUUCCAGa------GGCCGaGGA-GUCCCUCG- -5'
33330 3' -56.8 NC_007605.1 + 18734 0.66 0.891188
Target:  5'- ------aCUCCGGgcgcCUCCUCGGGGccAGCu -3'
miRNA:   3'- guuuccaGAGGCC----GAGGAGUCCC--UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.