miRNA display CGI


Results 1 - 20 of 488 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33330 5' -60.9 NC_007605.1 + 108629 0.66 0.75314
Target:  5'- ---gCGGCCGAAGaAGggAGGGCCUGCg -3'
miRNA:   3'- cccgGCCGGUUUC-UCggUCUCGGGCG- -5'
33330 5' -60.9 NC_007605.1 + 126288 0.66 0.75314
Target:  5'- aGGGCCa-CCAGucuccGGGCCGGguccgGGCCCGa -3'
miRNA:   3'- -CCCGGccGGUUu----CUCGGUC-----UCGGGCg -5'
33330 5' -60.9 NC_007605.1 + 61753 0.66 0.75314
Target:  5'- uGG-CGGCUGGAGAGaaGGAuGCCCGg -3'
miRNA:   3'- cCCgGCCGGUUUCUCggUCU-CGGGCg -5'
33330 5' -60.9 NC_007605.1 + 80657 0.66 0.75314
Target:  5'- uGGUaacccauaGGCCAuccGGcGGCCAGGGUuuGCa -3'
miRNA:   3'- cCCGg-------CCGGUu--UC-UCGGUCUCGggCG- -5'
33330 5' -60.9 NC_007605.1 + 122950 0.66 0.75314
Target:  5'- --cCCGGCC-AGGcGCauCAGGGCCUGCu -3'
miRNA:   3'- cccGGCCGGuUUCuCG--GUCUCGGGCG- -5'
33330 5' -60.9 NC_007605.1 + 105528 0.66 0.75314
Target:  5'- cGGGUCgggGGCCAgauuuguuguAGGAGCagcGAGCCgCGUc -3'
miRNA:   3'- -CCCGG---CCGGU----------UUCUCGgu-CUCGG-GCG- -5'
33330 5' -60.9 NC_007605.1 + 126178 0.66 0.75314
Target:  5'- gGGGcCCGGCCcggccAAGAGCgaagacgaGGAGUCUGa -3'
miRNA:   3'- -CCC-GGCCGGu----UUCUCGg-------UCUCGGGCg -5'
33330 5' -60.9 NC_007605.1 + 148893 0.66 0.75314
Target:  5'- uGGCgGGaguauGGGGCCAGAGgCaCGCu -3'
miRNA:   3'- cCCGgCCgguu-UCUCGGUCUCgG-GCG- -5'
33330 5' -60.9 NC_007605.1 + 147789 0.66 0.75314
Target:  5'- aGGGUgGGCUAAcucuauGGCCAGAGCUa-- -3'
miRNA:   3'- -CCCGgCCGGUUuc----UCGGUCUCGGgcg -5'
33330 5' -60.9 NC_007605.1 + 122775 0.66 0.75314
Target:  5'- gGGGCgCGGCCAGGGuGUCAGcGUaaaccucauuuCCGa -3'
miRNA:   3'- -CCCG-GCCGGUUUCuCGGUCuCG-----------GGCg -5'
33330 5' -60.9 NC_007605.1 + 158363 0.66 0.744792
Target:  5'- gGGGCCuGGCCAAcgGGgugcgccgcuacgccAGCCAGAcggagcucuaugacGCCCcCg -3'
miRNA:   3'- -CCCGG-CCGGUU--UC---------------UCGGUCU--------------CGGGcG- -5'
33330 5' -60.9 NC_007605.1 + 48454 0.66 0.74386
Target:  5'- aGGaGCUcgugggGGCCGGGGGGCCcugccuGAGCCgGg -3'
miRNA:   3'- -CC-CGG------CCGGUUUCUCGGu-----CUCGGgCg -5'
33330 5' -60.9 NC_007605.1 + 87276 0.66 0.74386
Target:  5'- aGGCCcGUCAuguuuguGAGCCGuGuGCCUGCa -3'
miRNA:   3'- cCCGGcCGGUuu-----CUCGGU-CuCGGGCG- -5'
33330 5' -60.9 NC_007605.1 + 164203 0.66 0.74386
Target:  5'- gGGGaCCGGCUAcgcGGGCCacaGGuGCCUGa -3'
miRNA:   3'- -CCC-GGCCGGUuu-CUCGG---UCuCGGGCg -5'
33330 5' -60.9 NC_007605.1 + 4749 0.66 0.74386
Target:  5'- -uGCCGGguacauguUCAuGGAGCgCAGGGUCUGCa -3'
miRNA:   3'- ccCGGCC--------GGUuUCUCG-GUCUCGGGCG- -5'
33330 5' -60.9 NC_007605.1 + 122296 0.66 0.74386
Target:  5'- cGGGCCGuggaaGCCuucaaccGGCCAGAGCa-GCu -3'
miRNA:   3'- -CCCGGC-----CGGuuuc---UCGGUCUCGggCG- -5'
33330 5' -60.9 NC_007605.1 + 51565 0.66 0.74386
Target:  5'- cGGUCGGCCAucguGAG-GCCccGGCCgCGUu -3'
miRNA:   3'- cCCGGCCGGU----UUCuCGGucUCGG-GCG- -5'
33330 5' -60.9 NC_007605.1 + 105283 0.66 0.74386
Target:  5'- gGGGCUgGGUgGGAGAGCgcggccccCGGGGUuuGCc -3'
miRNA:   3'- -CCCGG-CCGgUUUCUCG--------GUCUCGggCG- -5'
33330 5' -60.9 NC_007605.1 + 106146 0.66 0.74386
Target:  5'- gGGGCCaccGGCCGuggugGGGAcGCCcGAcgGCaCCGCg -3'
miRNA:   3'- -CCCGG---CCGGU-----UUCU-CGGuCU--CG-GGCG- -5'
33330 5' -60.9 NC_007605.1 + 55960 0.66 0.74386
Target:  5'- aGGGCgGuGCCcAGGuAGa-GGAGCUCGCg -3'
miRNA:   3'- -CCCGgC-CGGuUUC-UCggUCUCGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.