miRNA display CGI


Results 1 - 20 of 332 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33331 5' -64.7 NC_007605.1 + 159891 0.66 0.548712
Target:  5'- aUGGCCGCCagaguuccaauagaGGaGCuccgagagCUCCGCCACCuCCGg -3'
miRNA:   3'- -ACCGGUGGa-------------CC-CG--------GAGGUGGUGG-GGU- -5'
33331 5' -64.7 NC_007605.1 + 72506 0.66 0.544936
Target:  5'- gGGCCuggaucucgucGCCUGGGUcagCUCCugCAUCUg- -3'
miRNA:   3'- aCCGG-----------UGGACCCG---GAGGugGUGGGgu -5'
33331 5' -64.7 NC_007605.1 + 6565 0.66 0.544936
Target:  5'- uUGGUCAUUUcgacacauucuaGGGUCUCUAUCACCCa- -3'
miRNA:   3'- -ACCGGUGGA------------CCCGGAGGUGGUGGGgu -5'
33331 5' -64.7 NC_007605.1 + 34198 0.66 0.544936
Target:  5'- aGGCCccccagACCcGGGUCUCgGCCAgCCgAg -3'
miRNA:   3'- aCCGG------UGGaCCCGGAGgUGGUgGGgU- -5'
33331 5' -64.7 NC_007605.1 + 40301 0.66 0.544936
Target:  5'- cGGCUACCcccagggugGGGCCagCggACCGCaCCCAc -3'
miRNA:   3'- aCCGGUGGa--------CCCGGagG--UGGUG-GGGU- -5'
33331 5' -64.7 NC_007605.1 + 18854 0.66 0.544936
Target:  5'- aGGCCccccagACCcGGGUCUCgGCCAgCCgAg -3'
miRNA:   3'- aCCGG------UGGaCCCGGAGgUGGUgGGgU- -5'
33331 5' -64.7 NC_007605.1 + 28060 0.66 0.544936
Target:  5'- aGGCCccccagACCcGGGUCUCgGCCAgCCgAg -3'
miRNA:   3'- aCCGG------UGGaCCCGGAGgUGGUgGGgU- -5'
33331 5' -64.7 NC_007605.1 + 12716 0.66 0.544936
Target:  5'- aGGCCccccagACCcGGGUCUCgGCCAgCCgAg -3'
miRNA:   3'- aCCGG------UGGaCCCGGAGgUGGUgGGgU- -5'
33331 5' -64.7 NC_007605.1 + 58066 0.66 0.544936
Target:  5'- cGGCCGCC---GCCUCC-CCugUCCu -3'
miRNA:   3'- aCCGGUGGaccCGGAGGuGGugGGGu -5'
33331 5' -64.7 NC_007605.1 + 5203 0.66 0.544936
Target:  5'- cGGCCuGCCaGGGCagagUCCcUgGCCCCAu -3'
miRNA:   3'- aCCGG-UGGaCCCGg---AGGuGgUGGGGU- -5'
33331 5' -64.7 NC_007605.1 + 15785 0.66 0.544936
Target:  5'- aGGCCccccagACCcGGGUCUCgGCCAgCCgAg -3'
miRNA:   3'- aCCGG------UGGaCCCGGAGgUGGUgGGgU- -5'
33331 5' -64.7 NC_007605.1 + 21923 0.66 0.544936
Target:  5'- aGGCCccccagACCcGGGUCUCgGCCAgCCgAg -3'
miRNA:   3'- aCCGG------UGGaCCCGGAGgUGGUgGGgU- -5'
33331 5' -64.7 NC_007605.1 + 24991 0.66 0.544936
Target:  5'- aGGCCccccagACCcGGGUCUCgGCCAgCCgAg -3'
miRNA:   3'- aCCGG------UGGaCCCGGAGgUGGUgGGgU- -5'
33331 5' -64.7 NC_007605.1 + 31129 0.66 0.544936
Target:  5'- aGGCCccccagACCcGGGUCUCgGCCAgCCgAg -3'
miRNA:   3'- aCCGG------UGGaCCCGGAGgUGGUgGGgU- -5'
33331 5' -64.7 NC_007605.1 + 97393 0.66 0.544936
Target:  5'- gGGCCAgguUgUGGGCCgggUCCagggGCCAUUCCAa -3'
miRNA:   3'- aCCGGU---GgACCCGG---AGG----UGGUGGGGU- -5'
33331 5' -64.7 NC_007605.1 + 87829 0.66 0.544936
Target:  5'- -uGCCGCg-GGGCCUCCugCcgcgggGCCUCGc -3'
miRNA:   3'- acCGGUGgaCCCGGAGGugG------UGGGGU- -5'
33331 5' -64.7 NC_007605.1 + 56323 0.66 0.54211
Target:  5'- cUGGCCacgGCCguucggGcGGCCUCCGCCAgggauaggaggcgcUUCCAg -3'
miRNA:   3'- -ACCGG---UGGa-----C-CCGGAGGUGGU--------------GGGGU- -5'
33331 5' -64.7 NC_007605.1 + 92301 0.66 0.541169
Target:  5'- gGGCUcugauuaagacacuGCCccGGGCCUCCuacuccaGCCACgCCGg -3'
miRNA:   3'- aCCGG--------------UGGa-CCCGGAGG-------UGGUGgGGU- -5'
33331 5' -64.7 NC_007605.1 + 50573 0.66 0.536472
Target:  5'- cUGGCgGCCggcgcccguccucggGGGCagcCCACCgcgGCCCCGc -3'
miRNA:   3'- -ACCGgUGGa--------------CCCGga-GGUGG---UGGGGU- -5'
33331 5' -64.7 NC_007605.1 + 136328 0.66 0.535534
Target:  5'- cGGCCGCCgcGGGCCaggaccUCAUCAgcgucCCCCGc -3'
miRNA:   3'- aCCGGUGGa-CCCGGa-----GGUGGU-----GGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.