miRNA display CGI


Results 1 - 20 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33333 3' -56 NC_007605.1 + 26960 0.66 0.946142
Target:  5'- aGGGUCCCcUCGgacagcuccuaagaaGgCACCggucgCCCAGUccuACCa -3'
miRNA:   3'- -CCCAGGGuAGU---------------UgGUGG-----GGGUCA---UGG- -5'
33333 3' -56 NC_007605.1 + 17754 0.66 0.946142
Target:  5'- aGGGUCCCcUCGgacagcuccuaagaaGgCACCggucgCCCAGUccuACCa -3'
miRNA:   3'- -CCCAGGGuAGU---------------UgGUGG-----GGGUCA---UGG- -5'
33333 3' -56 NC_007605.1 + 20823 0.66 0.946142
Target:  5'- aGGGUCCCcUCGgacagcuccuaagaaGgCACCggucgCCCAGUccuACCa -3'
miRNA:   3'- -CCCAGGGuAGU---------------UgGUGG-----GGGUCA---UGG- -5'
33333 3' -56 NC_007605.1 + 23892 0.66 0.946142
Target:  5'- aGGGUCCCcUCGgacagcuccuaagaaGgCACCggucgCCCAGUccuACCa -3'
miRNA:   3'- -CCCAGGGuAGU---------------UgGUGG-----GGGUCA---UGG- -5'
33333 3' -56 NC_007605.1 + 33098 0.66 0.946142
Target:  5'- aGGGUCCCcUCGgacagcuccuaagaaGgCACCggucgCCCAGUccuACCa -3'
miRNA:   3'- -CCCAGGGuAGU---------------UgGUGG-----GGGUCA---UGG- -5'
33333 3' -56 NC_007605.1 + 14685 0.66 0.946142
Target:  5'- aGGGUCCCcUCGgacagcuccuaagaaGgCACCggucgCCCAGUccuACCa -3'
miRNA:   3'- -CCCAGGGuAGU---------------UgGUGG-----GGGUCA---UGG- -5'
33333 3' -56 NC_007605.1 + 30029 0.66 0.946142
Target:  5'- aGGGUCCCcUCGgacagcuccuaagaaGgCACCggucgCCCAGUccuACCa -3'
miRNA:   3'- -CCCAGGGuAGU---------------UgGUGG-----GGGUCA---UGG- -5'
33333 3' -56 NC_007605.1 + 19691 0.66 0.944406
Target:  5'- ---gCCCGUCcACgGCUCCCGGgcCCa -3'
miRNA:   3'- cccaGGGUAGuUGgUGGGGGUCauGG- -5'
33333 3' -56 NC_007605.1 + 35035 0.66 0.944406
Target:  5'- ---gCCCGUCcACgGCUCCCGGgcCCa -3'
miRNA:   3'- cccaGGGUAGuUGgUGGGGGUCauGG- -5'
33333 3' -56 NC_007605.1 + 28898 0.66 0.944406
Target:  5'- ---gCCCGUCcACgGCUCCCGGgcCCa -3'
miRNA:   3'- cccaGGGUAGuUGgUGGGGGUCauGG- -5'
33333 3' -56 NC_007605.1 + 26083 0.66 0.944406
Target:  5'- gGGGUCCCcgagggugaGGCCcaGCCCCCucccGCCc -3'
miRNA:   3'- -CCCAGGGuag------UUGG--UGGGGGuca-UGG- -5'
33333 3' -56 NC_007605.1 + 13808 0.66 0.944406
Target:  5'- gGGGUCCCcgagggugaGGCCcaGCCCCCucccGCCc -3'
miRNA:   3'- -CCCAGGGuag------UUGG--UGGGGGuca-UGG- -5'
33333 3' -56 NC_007605.1 + 25829 0.66 0.944406
Target:  5'- ---gCCCGUCcACgGCUCCCGGgcCCa -3'
miRNA:   3'- cccaGGGUAGuUGgUGGGGGUCauGG- -5'
33333 3' -56 NC_007605.1 + 16877 0.66 0.944406
Target:  5'- gGGGUCCCcgagggugaGGCCcaGCCCCCucccGCCc -3'
miRNA:   3'- -CCCAGGGuag------UUGG--UGGGGGuca-UGG- -5'
33333 3' -56 NC_007605.1 + 62538 0.66 0.944406
Target:  5'- -cGUCCag--GGCCGCCUCCAGaugGCCg -3'
miRNA:   3'- ccCAGGguagUUGGUGGGGGUCa--UGG- -5'
33333 3' -56 NC_007605.1 + 32221 0.66 0.944406
Target:  5'- gGGGUCCCcgagggugaGGCCcaGCCCCCucccGCCc -3'
miRNA:   3'- -CCCAGGGuag------UUGG--UGGGGGuca-UGG- -5'
33333 3' -56 NC_007605.1 + 3373 0.66 0.944406
Target:  5'- aGGUCCCGUgGcccugGCCGgCCCCAuuucuCCg -3'
miRNA:   3'- cCCAGGGUAgU-----UGGUgGGGGUcau--GG- -5'
33333 3' -56 NC_007605.1 + 16622 0.66 0.944406
Target:  5'- ---gCCCGUCcACgGCUCCCGGgcCCa -3'
miRNA:   3'- cccaGGGUAGuUGgUGGGGGUCauGG- -5'
33333 3' -56 NC_007605.1 + 31966 0.66 0.944406
Target:  5'- ---gCCCGUCcACgGCUCCCGGgcCCa -3'
miRNA:   3'- cccaGGGUAGuUGgUGGGGGUCauGG- -5'
33333 3' -56 NC_007605.1 + 22760 0.66 0.944406
Target:  5'- ---gCCCGUCcACgGCUCCCGGgcCCa -3'
miRNA:   3'- cccaGGGUAGuUGgUGGGGGUCauGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.