miRNA display CGI


Results 1 - 20 of 22 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33336 3' -46.8 NC_007605.1 + 106298 0.66 0.999988
Target:  5'- gCGGACAa--GAgucUGCgGUCUCGGGu -3'
miRNA:   3'- -GCCUGUaaaCUguaAUGaCAGAGCCC- -5'
33336 3' -46.8 NC_007605.1 + 106415 0.66 0.999988
Target:  5'- aGGugGUcUGcCAaaGCUG-CUCGGGg -3'
miRNA:   3'- gCCugUAaACuGUaaUGACaGAGCCC- -5'
33336 3' -46.8 NC_007605.1 + 45487 0.66 0.999983
Target:  5'- aCGuGGCAgggGACGgacCUG-CUCGGGg -3'
miRNA:   3'- -GC-CUGUaaaCUGUaauGACaGAGCCC- -5'
33336 3' -46.8 NC_007605.1 + 23228 0.66 0.999976
Target:  5'- uGGACAgg-GGCGggaggggGCUGggccucaccCUCGGGg -3'
miRNA:   3'- gCCUGUaaaCUGUaa-----UGACa--------GAGCCC- -5'
33336 3' -46.8 NC_007605.1 + 32435 0.66 0.999976
Target:  5'- uGGACAgg-GGCGggaggggGCUGggccucaccCUCGGGg -3'
miRNA:   3'- gCCUGUaaaCUGUaa-----UGACa--------GAGCCC- -5'
33336 3' -46.8 NC_007605.1 + 14022 0.66 0.999976
Target:  5'- uGGACAgg-GGCGggaggggGCUGggccucaccCUCGGGg -3'
miRNA:   3'- gCCUGUaaaCUGUaa-----UGACa--------GAGCCC- -5'
33336 3' -46.8 NC_007605.1 + 29366 0.66 0.999976
Target:  5'- uGGACAgg-GGCGggaggggGCUGggccucaccCUCGGGg -3'
miRNA:   3'- gCCUGUaaaCUGUaa-----UGACa--------GAGCCC- -5'
33336 3' -46.8 NC_007605.1 + 17091 0.66 0.999976
Target:  5'- uGGACAgg-GGCGggaggggGCUGggccucaccCUCGGGg -3'
miRNA:   3'- gCCUGUaaaCUGUaa-----UGACa--------GAGCCC- -5'
33336 3' -46.8 NC_007605.1 + 26297 0.66 0.999976
Target:  5'- uGGACAgg-GGCGggaggggGCUGggccucaccCUCGGGg -3'
miRNA:   3'- gCCUGUaaaCUGUaa-----UGACa--------GAGCCC- -5'
33336 3' -46.8 NC_007605.1 + 117305 0.66 0.999958
Target:  5'- uGGugGUUgcucgGAUGUUGCUGUCcauggugauguaggaCGGGa -3'
miRNA:   3'- gCCugUAAa----CUGUAAUGACAGa--------------GCCC- -5'
33336 3' -46.8 NC_007605.1 + 103925 0.66 0.999957
Target:  5'- cCGGGCc-UUGACGUggGCccggagGUCUCGGa -3'
miRNA:   3'- -GCCUGuaAACUGUAa-UGa-----CAGAGCCc -5'
33336 3' -46.8 NC_007605.1 + 113601 0.67 0.999943
Target:  5'- aGGACAcgUGACA----UGUC-CGGGu -3'
miRNA:   3'- gCCUGUaaACUGUaaugACAGaGCCC- -5'
33336 3' -46.8 NC_007605.1 + 20159 0.67 0.999924
Target:  5'- uGGACAgg-GGCGggaggggGCUGggccucacCUCGGGg -3'
miRNA:   3'- gCCUGUaaaCUGUaa-----UGACa-------GAGCCC- -5'
33336 3' -46.8 NC_007605.1 + 114739 0.67 0.9999
Target:  5'- uCGGACGggcaGGCAUuuuuggUGCUGcCUgGGGg -3'
miRNA:   3'- -GCCUGUaaa-CUGUA------AUGACaGAgCCC- -5'
33336 3' -46.8 NC_007605.1 + 47558 0.67 0.9999
Target:  5'- uGGACc--UGACGUUGCaGgccCUUGGGg -3'
miRNA:   3'- gCCUGuaaACUGUAAUGaCa--GAGCCC- -5'
33336 3' -46.8 NC_007605.1 + 107733 0.67 0.999833
Target:  5'- aGGGCAc-UGACuauguccCUGUCUCGGa -3'
miRNA:   3'- gCCUGUaaACUGuaau---GACAGAGCCc -5'
33336 3' -46.8 NC_007605.1 + 77232 0.68 0.999565
Target:  5'- gGGACG-UUGGCGggACUGgcacgguggCUUGGGc -3'
miRNA:   3'- gCCUGUaAACUGUaaUGACa--------GAGCCC- -5'
33336 3' -46.8 NC_007605.1 + 50456 0.69 0.998983
Target:  5'- uGGGCAg--GGCA--GCUGcaUCUUGGGg -3'
miRNA:   3'- gCCUGUaaaCUGUaaUGAC--AGAGCCC- -5'
33336 3' -46.8 NC_007605.1 + 47097 0.7 0.998191
Target:  5'- uGGAUAUgauuagUGAUAUgucucagcaACUGUCUCGGu -3'
miRNA:   3'- gCCUGUAa-----ACUGUAa--------UGACAGAGCCc -5'
33336 3' -46.8 NC_007605.1 + 47096 0.7 0.998191
Target:  5'- aUGGAUAUgauuagUGAUAUgucucagcaACUGUCUCGGu -3'
miRNA:   3'- -GCCUGUAa-----ACUGUAa--------UGACAGAGCCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.