miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33337 3' -56.7 NC_007605.1 + 40301 0.66 0.894288
Target:  5'- -cGGCUAcccccAGGGuGGgGCCAGcGGAccGCAc -3'
miRNA:   3'- gaCCGAUu----UCCC-CCgUGGUC-CCU--UGU- -5'
33337 3' -56.7 NC_007605.1 + 51051 0.66 0.894288
Target:  5'- gCUGGUUGGGGaaGGaGCuCCAGGGAAUc -3'
miRNA:   3'- -GACCGAUUUCc-CC-CGuGGUCCCUUGu -5'
33337 3' -56.7 NC_007605.1 + 169459 0.66 0.894288
Target:  5'- -cGGCUugcuGGGGCAUgGGGGGccGCGc -3'
miRNA:   3'- gaCCGAuuucCCCCGUGgUCCCU--UGU- -5'
33337 3' -56.7 NC_007605.1 + 88902 0.66 0.894288
Target:  5'- -gGGCguauGGGGGCucgggGCUGGGGAGa- -3'
miRNA:   3'- gaCCGauuuCCCCCG-----UGGUCCCUUgu -5'
33337 3' -56.7 NC_007605.1 + 157027 0.66 0.887575
Target:  5'- --aGCUGAAGGa--CACCAGGGGGCGc -3'
miRNA:   3'- gacCGAUUUCCcccGUGGUCCCUUGU- -5'
33337 3' -56.7 NC_007605.1 + 15167 0.66 0.887575
Target:  5'- -gGGacGGAGGGGGCcugaaGCCcGGGGACu -3'
miRNA:   3'- gaCCgaUUUCCCCCG-----UGGuCCCUUGu -5'
33337 3' -56.7 NC_007605.1 + 61026 0.66 0.887575
Target:  5'- aCUGcGCccccucaacuUAGAGGGGGaaggcaagGCCGGGGAcGCAg -3'
miRNA:   3'- -GAC-CG----------AUUUCCCCCg-------UGGUCCCU-UGU- -5'
33337 3' -56.7 NC_007605.1 + 37237 0.66 0.887575
Target:  5'- -gGGC-AGGGGcaaGGGCAaguCCAGGGAcaaGCAa -3'
miRNA:   3'- gaCCGaUUUCC---CCCGU---GGUCCCU---UGU- -5'
33337 3' -56.7 NC_007605.1 + 57026 0.66 0.887575
Target:  5'- cCUGGCgguguccagugUGAuGGGGG-ACguGGGGGCAc -3'
miRNA:   3'- -GACCG-----------AUUuCCCCCgUGguCCCUUGU- -5'
33337 3' -56.7 NC_007605.1 + 28301 0.66 0.880637
Target:  5'- gCUGGCcccGAGGaGGCGCCAGgcgcGGGGCc -3'
miRNA:   3'- -GACCGau-UUCCcCCGUGGUC----CCUUGu -5'
33337 3' -56.7 NC_007605.1 + 25232 0.66 0.880637
Target:  5'- gCUGGCcccGAGGaGGCGCCAGgcgcGGGGCc -3'
miRNA:   3'- -GACCGau-UUCCcCCGUGGUC----CCUUGu -5'
33337 3' -56.7 NC_007605.1 + 34439 0.66 0.880637
Target:  5'- gCUGGCcccGAGGaGGCGCCAGgcgcGGGGCc -3'
miRNA:   3'- -GACCGau-UUCCcCCGUGGUC----CCUUGu -5'
33337 3' -56.7 NC_007605.1 + 12957 0.66 0.880637
Target:  5'- gCUGGCcccGAGGaGGCGCCAGgcgcGGGGCc -3'
miRNA:   3'- -GACCGau-UUCCcCCGUGGUC----CCUUGu -5'
33337 3' -56.7 NC_007605.1 + 16026 0.66 0.880637
Target:  5'- gCUGGCcccGAGGaGGCGCCAGgcgcGGGGCc -3'
miRNA:   3'- -GACCGau-UUCCcCCGUGGUC----CCUUGu -5'
33337 3' -56.7 NC_007605.1 + 31370 0.66 0.880637
Target:  5'- gCUGGCcccGAGGaGGCGCCAGgcgcGGGGCc -3'
miRNA:   3'- -GACCGau-UUCCcCCGUGGUC----CCUUGu -5'
33337 3' -56.7 NC_007605.1 + 19095 0.66 0.880637
Target:  5'- gCUGGCcccGAGGaGGCGCCAGgcgcGGGGCc -3'
miRNA:   3'- -GACCGau-UUCCcCCGUGGUC----CCUUGu -5'
33337 3' -56.7 NC_007605.1 + 22163 0.66 0.880637
Target:  5'- gCUGGCcccGAGGaGGCGCCAGgcgcGGGGCc -3'
miRNA:   3'- -GACCGau-UUCCcCCGUGGUC----CCUUGu -5'
33337 3' -56.7 NC_007605.1 + 23147 0.66 0.879223
Target:  5'- -gGGCUGggccgccAGGGGGGCAaaAGGGcucuggaGGCAc -3'
miRNA:   3'- gaCCGAU-------UUCCCCCGUggUCCC-------UUGU- -5'
33337 3' -56.7 NC_007605.1 + 57981 0.66 0.878512
Target:  5'- gUGGCgugGAGggagcggggaccccGGGGGUgugaccuagGCCGGGGAugGg -3'
miRNA:   3'- gACCGa--UUU--------------CCCCCG---------UGGUCCCUugU- -5'
33337 3' -56.7 NC_007605.1 + 16888 0.66 0.873479
Target:  5'- gUGGacacAGGGGGGCGgggauggcCCGGGuGGACAg -3'
miRNA:   3'- gACCgau-UUCCCCCGU--------GGUCC-CUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.