miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33337 5' -55.1 NC_007605.1 + 66110 0.66 0.957598
Target:  5'- gUUUGGc-CUAAgGGCCuCCUCCuuGUUGGu -3'
miRNA:   3'- -AGACCauGGUUgCCGG-GGAGG--UAACC- -5'
33337 5' -55.1 NC_007605.1 + 86090 0.66 0.953785
Target:  5'- cCUGG-GCCGG-GGCCuCCaUCCAgUGGg -3'
miRNA:   3'- aGACCaUGGUUgCCGG-GG-AGGUaACC- -5'
33337 5' -55.1 NC_007605.1 + 4407 0.66 0.953785
Target:  5'- cCUGGUGgaGAUGGCCCUggCCGggcagcgGGg -3'
miRNA:   3'- aGACCAUggUUGCCGGGGa-GGUaa-----CC- -5'
33337 5' -55.1 NC_007605.1 + 115834 0.66 0.949746
Target:  5'- gUCUGGcACCA--GGcCCCCUCgCAguUUGGc -3'
miRNA:   3'- -AGACCaUGGUugCC-GGGGAG-GU--AACC- -5'
33337 5' -55.1 NC_007605.1 + 3728 0.66 0.949746
Target:  5'- gUCUGG-ACCAggcccgguGgGGCUCCUCCcUUGc -3'
miRNA:   3'- -AGACCaUGGU--------UgCCGGGGAGGuAACc -5'
33337 5' -55.1 NC_007605.1 + 157560 0.66 0.94933
Target:  5'- --cGGUGCCccccACGGCCCCcgggaagUCCc-UGGg -3'
miRNA:   3'- agaCCAUGGu---UGCCGGGG-------AGGuaACC- -5'
33337 5' -55.1 NC_007605.1 + 102614 0.66 0.948067
Target:  5'- gCUGGagcaugccaagaucUGCCAgcuccugaacACGGCCCCUcucaaggCCAUcgUGGg -3'
miRNA:   3'- aGACC--------------AUGGU----------UGCCGGGGA-------GGUA--ACC- -5'
33337 5' -55.1 NC_007605.1 + 40349 0.66 0.94548
Target:  5'- cCUGGUGCCAggcAgGGaCCCCgcgCCAc--- -3'
miRNA:   3'- aGACCAUGGU---UgCC-GGGGa--GGUaacc -5'
33337 5' -55.1 NC_007605.1 + 143164 0.66 0.94548
Target:  5'- cCUGGUGCCAggcAgGGaCCCCgcgCCAc--- -3'
miRNA:   3'- aGACCAUGGU---UgCC-GGGGa--GGUaacc -5'
33337 5' -55.1 NC_007605.1 + 158153 0.66 0.940983
Target:  5'- gUCUGGcugGCgUAGCGGCgCaCC-CCGUUGGc -3'
miRNA:   3'- -AGACCa--UG-GUUGCCG-G-GGaGGUAACC- -5'
33337 5' -55.1 NC_007605.1 + 165952 0.66 0.936252
Target:  5'- -aUGGUGCCAAUGGgcgcgggucCCCCUagccCCGgcgGGg -3'
miRNA:   3'- agACCAUGGUUGCC---------GGGGA----GGUaa-CC- -5'
33337 5' -55.1 NC_007605.1 + 101843 0.66 0.936252
Target:  5'- cUCUGGcGCCcuCGGCUCCUcggCCAUUc- -3'
miRNA:   3'- -AGACCaUGGuuGCCGGGGA---GGUAAcc -5'
33337 5' -55.1 NC_007605.1 + 146737 0.67 0.931287
Target:  5'- -gUGGUGCUAugGGCuCCCUagggacUCAUguagUGGg -3'
miRNA:   3'- agACCAUGGUugCCG-GGGA------GGUA----ACC- -5'
33337 5' -55.1 NC_007605.1 + 161466 0.67 0.929234
Target:  5'- gCUGGgcugcgcaagcagGCCGGgGGCUCUUCCAUgcGGa -3'
miRNA:   3'- aGACCa------------UGGUUgCCGGGGAGGUAa-CC- -5'
33337 5' -55.1 NC_007605.1 + 112249 0.67 0.926085
Target:  5'- cCUGGUGCCugaaGaCCCaCUCCcUUGGa -3'
miRNA:   3'- aGACCAUGGuug-CcGGG-GAGGuAACC- -5'
33337 5' -55.1 NC_007605.1 + 3048 0.67 0.920649
Target:  5'- cCUGGUGCuUGAUGGCCCCcagcuccCCGUUa- -3'
miRNA:   3'- aGACCAUG-GUUGCCGGGGa------GGUAAcc -5'
33337 5' -55.1 NC_007605.1 + 21455 0.67 0.918972
Target:  5'- cUCUGGUaACgAGCagagaagaaguagaGGCCCgCggCCAUUGGg -3'
miRNA:   3'- -AGACCA-UGgUUG--------------CCGGG-Ga-GGUAACC- -5'
33337 5' -55.1 NC_007605.1 + 18386 0.67 0.918972
Target:  5'- cUCUGGUaACgAGCagagaagaaguagaGGCCCgCggCCAUUGGg -3'
miRNA:   3'- -AGACCA-UGgUUG--------------CCGGG-Ga-GGUAACC- -5'
33337 5' -55.1 NC_007605.1 + 33731 0.67 0.918972
Target:  5'- cUCUGGUaACgAGCagagaagaaguagaGGCCCgCggCCAUUGGg -3'
miRNA:   3'- -AGACCA-UGgUUG--------------CCGGG-Ga-GGUAACC- -5'
33337 5' -55.1 NC_007605.1 + 15317 0.67 0.918972
Target:  5'- cUCUGGUaACgAGCagagaagaaguagaGGCCCgCggCCAUUGGg -3'
miRNA:   3'- -AGACCA-UGgUUG--------------CCGGG-Ga-GGUAACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.