miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33338 3' -56.5 NC_007605.1 + 141076 0.66 0.883017
Target:  5'- gGUCCGCUGCcccgcuccggCGGGgggugGCCGGCugcagccgGGUCCg -3'
miRNA:   3'- -UAGGUGACGa---------GUCCa----UGGUUG--------CCGGG- -5'
33338 3' -56.5 NC_007605.1 + 4603 0.67 0.868653
Target:  5'- gGUCCAgaucaaaUGUUUgAGGUGCagcACGGCCCa -3'
miRNA:   3'- -UAGGUg------ACGAG-UCCAUGgu-UGCCGGG- -5'
33338 3' -56.5 NC_007605.1 + 36857 0.66 0.875944
Target:  5'- -aCCACUaCUCAcGGUACUAcaaaGGCCUa -3'
miRNA:   3'- uaGGUGAcGAGU-CCAUGGUug--CCGGG- -5'
33338 3' -56.5 NC_007605.1 + 16944 0.66 0.875944
Target:  5'- -cCCAaaaguagagGCUCAGG--CCAGCGcGCCCu -3'
miRNA:   3'- uaGGUga-------CGAGUCCauGGUUGC-CGGG- -5'
33338 3' -56.5 NC_007605.1 + 2979 0.66 0.875944
Target:  5'- aGUUCAUggGCaCAGGgGCCGugcagACGGCCCu -3'
miRNA:   3'- -UAGGUGa-CGaGUCCaUGGU-----UGCCGGG- -5'
33338 3' -56.5 NC_007605.1 + 140669 0.66 0.883017
Target:  5'- gGUCCGCUGCcccgcuccggCGGGgggugGCCGGCugcagccgGGUCCg -3'
miRNA:   3'- -UAGGUGACGa---------GUCCa----UGGUUG--------CCGGG- -5'
33338 3' -56.5 NC_007605.1 + 140770 0.66 0.883017
Target:  5'- gGUCCGCUGCcccgcuccggCGGGgggugGCCGGCugcagccgGGUCCg -3'
miRNA:   3'- -UAGGUGACGa---------GUCCa----UGGUUG--------CCGGG- -5'
33338 3' -56.5 NC_007605.1 + 140872 0.66 0.883017
Target:  5'- gGUCCGCUGCcccgcuccggCGGGgggugGCCGGCugcagccgGGUCCg -3'
miRNA:   3'- -UAGGUGACGa---------GUCCa----UGGUUG--------CCGGG- -5'
33338 3' -56.5 NC_007605.1 + 140974 0.66 0.883017
Target:  5'- gGUCCGCUGCcccgcuccggCGGGgggugGCCGGCugcagccgGGUCCg -3'
miRNA:   3'- -UAGGUGACGa---------GUCCa----UGGUUG--------CCGGG- -5'
33338 3' -56.5 NC_007605.1 + 150787 0.67 0.861152
Target:  5'- -cCCgggACUGaCUCAGG-GCCAcauccccuCGGCCCg -3'
miRNA:   3'- uaGG---UGAC-GAGUCCaUGGUu-------GCCGGG- -5'
33338 3' -56.5 NC_007605.1 + 68256 0.67 0.861152
Target:  5'- cGUUguCUGCUC-GGUAgCAGCGGaCUCg -3'
miRNA:   3'- -UAGguGACGAGuCCAUgGUUGCC-GGG- -5'
33338 3' -56.5 NC_007605.1 + 150590 0.67 0.844736
Target:  5'- gGUCCA-UGCUCAGaGaacaGCCcucccgggcggugGGCGGCCCg -3'
miRNA:   3'- -UAGGUgACGAGUC-Ca---UGG-------------UUGCCGGG- -5'
33338 3' -56.5 NC_007605.1 + 141688 0.7 0.688225
Target:  5'- gGUCCGCUGCcCcgcuccggcgggGGGUGCCGGCugcagccgGGUCCg -3'
miRNA:   3'- -UAGGUGACGaG------------UCCAUGGUUG--------CCGGG- -5'
33338 3' -56.5 NC_007605.1 + 71801 0.69 0.732006
Target:  5'- -aCCuCUGuCUCAGGcACCGgaugcccccggcuccACGGCCCc -3'
miRNA:   3'- uaGGuGAC-GAGUCCaUGGU---------------UGCCGGG- -5'
33338 3' -56.5 NC_007605.1 + 53833 0.69 0.737865
Target:  5'- -gCCGCUGCcCGGG--CCAggGCGGCCUc -3'
miRNA:   3'- uaGGUGACGaGUCCauGGU--UGCCGGG- -5'
33338 3' -56.5 NC_007605.1 + 10004 0.68 0.785215
Target:  5'- cUCCGcCUGCgCAGGUGCCAcaGGUUCc -3'
miRNA:   3'- uAGGU-GACGaGUCCAUGGUugCCGGG- -5'
33338 3' -56.5 NC_007605.1 + 147860 0.68 0.803261
Target:  5'- -cCCGCUugugcGCUUAuguguuacacGGUGCCAAuaacCGGCCCg -3'
miRNA:   3'- uaGGUGA-----CGAGU----------CCAUGGUU----GCCGGG- -5'
33338 3' -56.5 NC_007605.1 + 48931 0.68 0.803261
Target:  5'- cAUCCcCUGCUUGGGacccgACCGcacuugcauGCGGCCg -3'
miRNA:   3'- -UAGGuGACGAGUCCa----UGGU---------UGCCGGg -5'
33338 3' -56.5 NC_007605.1 + 157242 0.68 0.812057
Target:  5'- cUCUuCUGCUcCAGGcACCA--GGCCCg -3'
miRNA:   3'- uAGGuGACGA-GUCCaUGGUugCCGGG- -5'
33338 3' -56.5 NC_007605.1 + 135068 0.67 0.837438
Target:  5'- -aCCug-GCUCAGGU-CCGGC-GCCCu -3'
miRNA:   3'- uaGGugaCGAGUCCAuGGUUGcCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.