miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33338 3' -56.5 NC_007605.1 + 140974 0.66 0.883017
Target:  5'- gGUCCGCUGCcccgcuccggCGGGgggugGCCGGCugcagccgGGUCCg -3'
miRNA:   3'- -UAGGUGACGa---------GUCCa----UGGUUG--------CCGGG- -5'
33338 3' -56.5 NC_007605.1 + 165650 0.66 0.883017
Target:  5'- -gUCACUGg-CAGGUGCCAG-GGCUUg -3'
miRNA:   3'- uaGGUGACgaGUCCAUGGUUgCCGGG- -5'
33338 3' -56.5 NC_007605.1 + 117345 0.66 0.883017
Target:  5'- -cCCAUcaGCUC-GGUGCUAAaGGCCCc -3'
miRNA:   3'- uaGGUGa-CGAGuCCAUGGUUgCCGGG- -5'
33338 3' -56.5 NC_007605.1 + 142808 0.66 0.883017
Target:  5'- gGUCCGCUGCcccgcuccggCGGGgggugGCCGGCugcagccgGGUCCg -3'
miRNA:   3'- -UAGGUGACGa---------GUCCa----UGGUUG--------CCGGG- -5'
33338 3' -56.5 NC_007605.1 + 141586 0.66 0.883017
Target:  5'- gGUCCGCUGCcccgcuccggCGGGgggugGCCGGCugcagccgGGUCCg -3'
miRNA:   3'- -UAGGUGACGa---------GUCCa----UGGUUG--------CCGGG- -5'
33338 3' -56.5 NC_007605.1 + 140872 0.66 0.883017
Target:  5'- gGUCCGCUGCcccgcuccggCGGGgggugGCCGGCugcagccgGGUCCg -3'
miRNA:   3'- -UAGGUGACGa---------GUCCa----UGGUUG--------CCGGG- -5'
33338 3' -56.5 NC_007605.1 + 140669 0.66 0.883017
Target:  5'- gGUCCGCUGCcccgcuccggCGGGgggugGCCGGCugcagccgGGUCCg -3'
miRNA:   3'- -UAGGUGACGa---------GUCCa----UGGUUG--------CCGGG- -5'
33338 3' -56.5 NC_007605.1 + 140770 0.66 0.883017
Target:  5'- gGUCCGCUGCcccgcuccggCGGGgggugGCCGGCugcagccgGGUCCg -3'
miRNA:   3'- -UAGGUGACGa---------GUCCa----UGGUUG--------CCGGG- -5'
33338 3' -56.5 NC_007605.1 + 2979 0.66 0.875944
Target:  5'- aGUUCAUggGCaCAGGgGCCGugcagACGGCCCu -3'
miRNA:   3'- -UAGGUGa-CGaGUCCaUGGU-----UGCCGGG- -5'
33338 3' -56.5 NC_007605.1 + 36857 0.66 0.875944
Target:  5'- -aCCACUaCUCAcGGUACUAcaaaGGCCUa -3'
miRNA:   3'- uaGGUGAcGAGU-CCAUGGUug--CCGGG- -5'
33338 3' -56.5 NC_007605.1 + 68650 0.66 0.875944
Target:  5'- uAUCUuCUgGCUCAGaggccGUACUGGCGGCCg -3'
miRNA:   3'- -UAGGuGA-CGAGUC-----CAUGGUUGCCGGg -5'
33338 3' -56.5 NC_007605.1 + 16944 0.66 0.875944
Target:  5'- -cCCAaaaguagagGCUCAGG--CCAGCGcGCCCu -3'
miRNA:   3'- uaGGUga-------CGAGUCCauGGUUGC-CGGG- -5'
33338 3' -56.5 NC_007605.1 + 4603 0.67 0.868653
Target:  5'- gGUCCAgaucaaaUGUUUgAGGUGCagcACGGCCCa -3'
miRNA:   3'- -UAGGUg------ACGAG-UCCAUGgu-UGCCGGG- -5'
33338 3' -56.5 NC_007605.1 + 95829 0.67 0.868653
Target:  5'- gGUCCACUGCcgCcGGaGCCuucUGGUCCa -3'
miRNA:   3'- -UAGGUGACGa-GuCCaUGGuu-GCCGGG- -5'
33338 3' -56.5 NC_007605.1 + 151065 0.67 0.866425
Target:  5'- -aCCAg-GCUgGGGUGCCGgagagagguagaaaGCGGgCCCa -3'
miRNA:   3'- uaGGUgaCGAgUCCAUGGU--------------UGCC-GGG- -5'
33338 3' -56.5 NC_007605.1 + 3386 0.67 0.861152
Target:  5'- -aCUGCUGCauucCAGGU-CCcgUGGCCCu -3'
miRNA:   3'- uaGGUGACGa---GUCCAuGGuuGCCGGG- -5'
33338 3' -56.5 NC_007605.1 + 68256 0.67 0.861152
Target:  5'- cGUUguCUGCUC-GGUAgCAGCGGaCUCg -3'
miRNA:   3'- -UAGguGACGAGuCCAUgGUUGCC-GGG- -5'
33338 3' -56.5 NC_007605.1 + 150787 0.67 0.861152
Target:  5'- -cCCgggACUGaCUCAGG-GCCAcauccccuCGGCCCg -3'
miRNA:   3'- uaGG---UGAC-GAGUCCaUGGUu-------GCCGGG- -5'
33338 3' -56.5 NC_007605.1 + 9903 0.67 0.861152
Target:  5'- cUCCACa-CUCAGGUGCCAgguaaaGCaGCaCCa -3'
miRNA:   3'- uAGGUGacGAGUCCAUGGU------UGcCG-GG- -5'
33338 3' -56.5 NC_007605.1 + 78788 0.67 0.853444
Target:  5'- -aUUACUGuCUCGGGU-CUuggcACGGCCCc -3'
miRNA:   3'- uaGGUGAC-GAGUCCAuGGu---UGCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.