miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33338 5' -54.7 NC_007605.1 + 50316 0.67 0.931155
Target:  5'- cCUGAcaGGGAGAgacacgcgcggcggAGAUgcagccgacggcgGGGCCGCGG-UGg -3'
miRNA:   3'- -GACU--CCCUCU--------------UUUA-------------CCCGGCGCCuAC- -5'
33338 5' -54.7 NC_007605.1 + 169685 0.67 0.92261
Target:  5'- aUGAGGGGGca---GGGUCGCaggGGGUGu -3'
miRNA:   3'- gACUCCCUCuuuuaCCCGGCG---CCUAC- -5'
33338 5' -54.7 NC_007605.1 + 170223 0.67 0.92261
Target:  5'- aUGAGGGGGca---GGGUCGCaggGGGUGu -3'
miRNA:   3'- gACUCCCUCuuuuaCCCGGCG---CCUAC- -5'
33338 5' -54.7 NC_007605.1 + 170745 0.67 0.92261
Target:  5'- aUGAGGGGGca---GGGUCGCaggGGGUGu -3'
miRNA:   3'- gACUCCCUCuuuuaCCCGGCG---CCUAC- -5'
33338 5' -54.7 NC_007605.1 + 171283 0.67 0.92261
Target:  5'- aUGAGGGGGca---GGGUCGCaggGGGUGu -3'
miRNA:   3'- gACUCCCUCuuuuaCCCGGCG---CCUAC- -5'
33338 5' -54.7 NC_007605.1 + 59697 0.67 0.921499
Target:  5'- gUGAGGGGGAAucgucgguuaGGGCCGgcaCGaGGUGg -3'
miRNA:   3'- gACUCCCUCUUuua-------CCCGGC---GC-CUAC- -5'
33338 5' -54.7 NC_007605.1 + 168784 0.67 0.916956
Target:  5'- -aGAGGGGGGguccucGAggGGGCCgucGCGGGc- -3'
miRNA:   3'- gaCUCCCUCU------UUuaCCCGG---CGCCUac -5'
33338 5' -54.7 NC_007605.1 + 32041 0.67 0.911062
Target:  5'- gCUGcAGGGGGGAcugacAccGGGCCGcCGGGg- -3'
miRNA:   3'- -GAC-UCCCUCUU-----UuaCCCGGC-GCCUac -5'
33338 5' -54.7 NC_007605.1 + 28972 0.67 0.911062
Target:  5'- gCUGcAGGGGGGAcugacAccGGGCCGcCGGGg- -3'
miRNA:   3'- -GAC-UCCCUCUU-----UuaCCCGGC-GCCUac -5'
33338 5' -54.7 NC_007605.1 + 25903 0.67 0.911062
Target:  5'- gCUGcAGGGGGGAcugacAccGGGCCGcCGGGg- -3'
miRNA:   3'- -GAC-UCCCUCUU-----UuaCCCGGC-GCCUac -5'
33338 5' -54.7 NC_007605.1 + 22834 0.67 0.911062
Target:  5'- gCUGcAGGGGGGAcugacAccGGGCCGcCGGGg- -3'
miRNA:   3'- -GAC-UCCCUCUU-----UuaCCCGGC-GCCUac -5'
33338 5' -54.7 NC_007605.1 + 16696 0.67 0.911062
Target:  5'- gCUGcAGGGGGGAcugacAccGGGCCGcCGGGg- -3'
miRNA:   3'- -GAC-UCCCUCUU-----UuaCCCGGC-GCCUac -5'
33338 5' -54.7 NC_007605.1 + 13627 0.67 0.911062
Target:  5'- gCUGcAGGGGGGAcugacAccGGGCCGcCGGGg- -3'
miRNA:   3'- -GAC-UCCCUCUU-----UuaCCCGGC-GCCUac -5'
33338 5' -54.7 NC_007605.1 + 19765 0.67 0.911062
Target:  5'- gCUGcAGGGGGGAcugacAccGGGCCGcCGGGg- -3'
miRNA:   3'- -GAC-UCCCUCUU-----UuaCCCGGC-GCCUac -5'
33338 5' -54.7 NC_007605.1 + 100107 0.67 0.911062
Target:  5'- -gGGGGGcAGAAuuUGcGGCCGgGGGa- -3'
miRNA:   3'- gaCUCCC-UCUUuuAC-CCGGCgCCUac -5'
33338 5' -54.7 NC_007605.1 + 19949 0.68 0.90493
Target:  5'- -aGGGGGGcGggGAU-GGCC-CGGGUGg -3'
miRNA:   3'- gaCUCCCU-CuuUUAcCCGGcGCCUAC- -5'
33338 5' -54.7 NC_007605.1 + 32224 0.68 0.90493
Target:  5'- -aGGGGGGcGggGAU-GGCC-CGGGUGg -3'
miRNA:   3'- gaCUCCCU-CuuUUAcCCGGcGCCUAC- -5'
33338 5' -54.7 NC_007605.1 + 23018 0.68 0.90493
Target:  5'- -aGGGGGGcGggGAU-GGCC-CGGGUGg -3'
miRNA:   3'- gaCUCCCU-CuuUUAcCCGGcGCCUAC- -5'
33338 5' -54.7 NC_007605.1 + 29155 0.68 0.90493
Target:  5'- -aGGGGGGcGggGAU-GGCC-CGGGUGg -3'
miRNA:   3'- gaCUCCCU-CuuUUAcCCGGcGCCUAC- -5'
33338 5' -54.7 NC_007605.1 + 16880 0.68 0.90493
Target:  5'- -aGGGGGGcGggGAU-GGCC-CGGGUGg -3'
miRNA:   3'- gaCUCCCU-CuuUUAcCCGGcGCCUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.