Results 1 - 20 of 22 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33339 | 3' | -48.4 | NC_007605.1 | + | 67153 | 0.66 | 0.999473 |
Target: 5'- ---cUUCUCCGgcaGGGUGACGGCGGc-- -3' miRNA: 3'- cuguAAGAGGU---UCUAUUGCUGCCcuc -5' |
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33339 | 3' | -48.4 | NC_007605.1 | + | 88824 | 0.66 | 0.999473 |
Target: 5'- aGACGUggugggccugUCUCCGauugcAGAUGugGGaacUGGGAGa -3' miRNA: 3'- -CUGUA----------AGAGGU-----UCUAUugCU---GCCCUC- -5' |
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33339 | 3' | -48.4 | NC_007605.1 | + | 95303 | 0.66 | 0.999473 |
Target: 5'- gGGCAUa--CUggGGaGACGGCGGGGGa -3' miRNA: 3'- -CUGUAagaGGuuCUaUUGCUGCCCUC- -5' |
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33339 | 3' | -48.4 | NC_007605.1 | + | 107150 | 0.66 | 0.999346 |
Target: 5'- aGACAaacaUCUCCGgcggcuccAGAUAgaGCGugGGGGu -3' miRNA: 3'- -CUGUa---AGAGGU--------UCUAU--UGCugCCCUc -5' |
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33339 | 3' | -48.4 | NC_007605.1 | + | 129999 | 0.66 | 0.999518 |
Target: 5'- uACGUUCUCCAgaaacugguccugcuGGA-GAUGAaGGGAGg -3' miRNA: 3'- cUGUAAGAGGU---------------UCUaUUGCUgCCCUC- -5' |
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33339 | 3' | -48.4 | NC_007605.1 | + | 86515 | 0.66 | 0.999735 |
Target: 5'- aGGCAgcgUCUUCAGGAcauuCGACGuGGAc -3' miRNA: 3'- -CUGUa--AGAGGUUCUauu-GCUGC-CCUc -5' |
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33339 | 3' | -48.4 | NC_007605.1 | + | 85688 | 0.66 | 0.999665 |
Target: 5'- uACAgagC-CCGAGAUGcCGcACGGGGGg -3' miRNA: 3'- cUGUaa-GaGGUUCUAUuGC-UGCCCUC- -5' |
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33339 | 3' | -48.4 | NC_007605.1 | + | 72358 | 0.67 | 0.998794 |
Target: 5'- aGACAUUCUCCAcGGUGGgGggcagggucucGCGGGu- -3' miRNA: 3'- -CUGUAAGAGGUuCUAUUgC-----------UGCCCuc -5' |
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33339 | 3' | -48.4 | NC_007605.1 | + | 51272 | 0.67 | 0.999011 |
Target: 5'- cACcUUCUCUAAGAgggggcucUGugGGCuGGGAGg -3' miRNA: 3'- cUGuAAGAGGUUCU--------AUugCUG-CCCUC- -5' |
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33339 | 3' | -48.4 | NC_007605.1 | + | 61604 | 0.67 | 0.999011 |
Target: 5'- cGAUAgacUCUCUAGGAgGGCGGCGGuGGc -3' miRNA: 3'- -CUGUa--AGAGGUUCUaUUGCUGCC-CUc -5' |
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33339 | 3' | -48.4 | NC_007605.1 | + | 100479 | 0.67 | 0.998238 |
Target: 5'- gGACAUUCUCUcugugaaaacgGGGAauACGugGcGGAGc -3' miRNA: 3'- -CUGUAAGAGG-----------UUCUauUGCugC-CCUC- -5' |
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33339 | 3' | -48.4 | NC_007605.1 | + | 149571 | 0.68 | 0.997479 |
Target: 5'- aGGCAcUCgUCCuGGcUggUGACGGGAGa -3' miRNA: 3'- -CUGUaAG-AGGuUCuAuuGCUGCCCUC- -5' |
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33339 | 3' | -48.4 | NC_007605.1 | + | 65475 | 0.68 | 0.997887 |
Target: 5'- cGCAUUCaCCAGGc-AGCG-CGGGAGg -3' miRNA: 3'- cUGUAAGaGGUUCuaUUGCuGCCCUC- -5' |
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33339 | 3' | -48.4 | NC_007605.1 | + | 74487 | 0.69 | 0.995141 |
Target: 5'- cACAagggCCuuGAUGACGACGGGGGc -3' miRNA: 3'- cUGUaagaGGuuCUAUUGCUGCCCUC- -5' |
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33339 | 3' | -48.4 | NC_007605.1 | + | 107996 | 0.7 | 0.988609 |
Target: 5'- -uCAUUCuUUCGGGggAACGAgGGGAGg -3' miRNA: 3'- cuGUAAG-AGGUUCuaUUGCUgCCCUC- -5' |
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33339 | 3' | -48.4 | NC_007605.1 | + | 80930 | 0.7 | 0.987052 |
Target: 5'- cGGCuUUCUCCGGGGUcguGCGuAUGGGAu -3' miRNA: 3'- -CUGuAAGAGGUUCUAu--UGC-UGCCCUc -5' |
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33339 | 3' | -48.4 | NC_007605.1 | + | 56719 | 0.71 | 0.983452 |
Target: 5'- aGCAguugCUCCAGGuccAGCGugGGGAc -3' miRNA: 3'- cUGUaa--GAGGUUCua-UUGCugCCCUc -5' |
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33339 | 3' | -48.4 | NC_007605.1 | + | 166605 | 0.72 | 0.96811 |
Target: 5'- gGACAUUCUUCugAAGG-AACGGCGGaGAGu -3' miRNA: 3'- -CUGUAAGAGG--UUCUaUUGCUGCC-CUC- -5' |
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33339 | 3' | -48.4 | NC_007605.1 | + | 6083 | 0.72 | 0.964804 |
Target: 5'- aGACAUUCUaUAAGAUAACGA-GGaGAGa -3' miRNA: 3'- -CUGUAAGAgGUUCUAUUGCUgCC-CUC- -5' |
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33339 | 3' | -48.4 | NC_007605.1 | + | 154509 | 0.74 | 0.912091 |
Target: 5'- -uUAUUCUaCCAuGAUAACGcCGGGAGa -3' miRNA: 3'- cuGUAAGA-GGUuCUAUUGCuGCCCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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