Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 33339 | 5' | -63.2 | NC_007605.1 | + | 160116 | 0.73 | 0.274931 |
|
Target: 5'- -gCCCCCGgagGUGGCGgagcUCUCGGaGCUCc -3' miRNA: 3'- ggGGGGGCa--CGCCGU----AGAGCC-CGAGa -5' |
|||||||
| 33339 | 5' | -63.2 | NC_007605.1 | + | 106285 | 0.74 | 0.253677 |
|
Target: 5'- cUCCaCCCUG-GCGGCggacaagagucugcgGUCUCGGGUUCUa -3' miRNA: 3'- -GGG-GGGGCaCGCCG---------------UAGAGCCCGAGA- -5' |
|||||||
| 33339 | 5' | -63.2 | NC_007605.1 | + | 104853 | 0.74 | 0.240269 |
|
Target: 5'- -gCCCCCGgGCGGCgccgaaacagGUUUUGGGCUCUu -3' miRNA: 3'- ggGGGGGCaCGCCG----------UAGAGCCCGAGA- -5' |
|||||||
| 33339 | 5' | -63.2 | NC_007605.1 | + | 132832 | 0.75 | 0.209332 |
|
Target: 5'- gCCCCCCCGUGCugGGCAgucaGGGC-CUg -3' miRNA: 3'- -GGGGGGGCACG--CCGUagagCCCGaGA- -5' |
|||||||
| 33339 | 5' | -63.2 | NC_007605.1 | + | 85888 | 1.09 | 0.00087 |
|
Target: 5'- gCCCCCCCGUGCGGCAUCUCGGGCUCUg -3' miRNA: 3'- -GGGGGGGCACGCCGUAGAGCCCGAGA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home