miRNA display CGI


Results 1 - 20 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33341 5' -55.4 NC_007605.1 + 54688 0.66 0.930755
Target:  5'- gAAGGAGGAggAGGGCgaggagCGGaGGAagcGGCCg -3'
miRNA:   3'- -UUCCUUCU--UCCCGga----GUC-CCUa--UCGG- -5'
33341 5' -55.4 NC_007605.1 + 146599 0.66 0.930755
Target:  5'- cAGGgcGu--GGCa-CAGGGGUGGCCg -3'
miRNA:   3'- uUCCuuCuucCCGgaGUCCCUAUCGG- -5'
33341 5' -55.4 NC_007605.1 + 87606 0.66 0.930234
Target:  5'- ----cGGAAGGGCCcggccuuUCAGGGGU-GCUu -3'
miRNA:   3'- uuccuUCUUCCCGG-------AGUCCCUAuCGG- -5'
33341 5' -55.4 NC_007605.1 + 57412 0.66 0.925434
Target:  5'- gAAGaGGAGAAGGaGCC-CGGGcggcuGAUGGCg -3'
miRNA:   3'- -UUC-CUUCUUCC-CGGaGUCC-----CUAUCGg -5'
33341 5' -55.4 NC_007605.1 + 153542 0.66 0.925434
Target:  5'- ----uGGAAGGGCCgguGGGAgaggaggcUGGCCg -3'
miRNA:   3'- uuccuUCUUCCCGGaguCCCU--------AUCGG- -5'
33341 5' -55.4 NC_007605.1 + 118198 0.66 0.924888
Target:  5'- -uGGAGGAcagcgugGGGGCCa-AGGuGGUAGCg -3'
miRNA:   3'- uuCCUUCU-------UCCCGGagUCC-CUAUCGg -5'
33341 5' -55.4 NC_007605.1 + 32037 0.66 0.919867
Target:  5'- cAGGggGGAcugacaccGGGCCgcCGGGGucccuccGGCCg -3'
miRNA:   3'- uUCCuuCUU--------CCCGGa-GUCCCua-----UCGG- -5'
33341 5' -55.4 NC_007605.1 + 16692 0.66 0.919867
Target:  5'- cAGGggGGAcugacaccGGGCCgcCGGGGucccuccGGCCg -3'
miRNA:   3'- uUCCuuCUU--------CCCGGa-GUCCCua-----UCGG- -5'
33341 5' -55.4 NC_007605.1 + 22830 0.66 0.919867
Target:  5'- cAGGggGGAcugacaccGGGCCgcCGGGGucccuccGGCCg -3'
miRNA:   3'- uUCCuuCUU--------CCCGGa-GUCCCua-----UCGG- -5'
33341 5' -55.4 NC_007605.1 + 13623 0.66 0.919867
Target:  5'- cAGGggGGAcugacaccGGGCCgcCGGGGucccuccGGCCg -3'
miRNA:   3'- uUCCuuCUU--------CCCGGa-GUCCCua-----UCGG- -5'
33341 5' -55.4 NC_007605.1 + 28968 0.66 0.919867
Target:  5'- cAGGggGGAcugacaccGGGCCgcCGGGGucccuccGGCCg -3'
miRNA:   3'- uUCCuuCUU--------CCCGGa-GUCCCua-----UCGG- -5'
33341 5' -55.4 NC_007605.1 + 19761 0.66 0.919867
Target:  5'- cAGGggGGAcugacaccGGGCCgcCGGGGucccuccGGCCg -3'
miRNA:   3'- uUCCuuCUU--------CCCGGa-GUCCCua-----UCGG- -5'
33341 5' -55.4 NC_007605.1 + 25899 0.66 0.919867
Target:  5'- cAGGggGGAcugacaccGGGCCgcCGGGGucccuccGGCCg -3'
miRNA:   3'- uUCCuuCUU--------CCCGGa-GUCCCua-----UCGG- -5'
33341 5' -55.4 NC_007605.1 + 25317 0.66 0.919297
Target:  5'- -uGGAGGcgggcccGAGGGgCUCuGGGGU-GCCc -3'
miRNA:   3'- uuCCUUC-------UUCCCgGAGuCCCUAuCGG- -5'
33341 5' -55.4 NC_007605.1 + 22248 0.66 0.919297
Target:  5'- -uGGAGGcgggcccGAGGGgCUCuGGGGU-GCCc -3'
miRNA:   3'- uuCCUUC-------UUCCCgGAGuCCCUAuCGG- -5'
33341 5' -55.4 NC_007605.1 + 16111 0.66 0.919297
Target:  5'- -uGGAGGcgggcccGAGGGgCUCuGGGGU-GCCc -3'
miRNA:   3'- uuCCUUC-------UUCCCgGAGuCCCUAuCGG- -5'
33341 5' -55.4 NC_007605.1 + 34524 0.66 0.919297
Target:  5'- -uGGAGGcgggcccGAGGGgCUCuGGGGU-GCCc -3'
miRNA:   3'- uuCCUUC-------UUCCCgGAGuCCCUAuCGG- -5'
33341 5' -55.4 NC_007605.1 + 143905 0.66 0.919297
Target:  5'- gAAGGAGGAAGGGuggcgcaCCUUaaguaggguagGGGGGUAcCCc -3'
miRNA:   3'- -UUCCUUCUUCCC-------GGAG-----------UCCCUAUcGG- -5'
33341 5' -55.4 NC_007605.1 + 28386 0.66 0.919297
Target:  5'- -uGGAGGcgggcccGAGGGgCUCuGGGGU-GCCc -3'
miRNA:   3'- uuCCUUC-------UUCCCgGAGuCCCUAuCGG- -5'
33341 5' -55.4 NC_007605.1 + 31455 0.66 0.919297
Target:  5'- -uGGAGGcgggcccGAGGGgCUCuGGGGU-GCCc -3'
miRNA:   3'- uuCCUUC-------UUCCCgGAGuCCCUAuCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.