miRNA display CGI


Results 1 - 20 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33341 5' -55.4 NC_007605.1 + 31235 0.66 0.914057
Target:  5'- aGAGGAAccAGGGaCCUCGGGcaccccagAGCCc -3'
miRNA:   3'- -UUCCUUcuUCCC-GGAGUCCcua-----UCGG- -5'
33341 5' -55.4 NC_007605.1 + 16032 0.66 0.901711
Target:  5'- aGAGGuc-AGGGGCacCUCAGGGu--GCCu -3'
miRNA:   3'- -UUCCuucUUCCCG--GAGUCCCuauCGG- -5'
33341 5' -55.4 NC_007605.1 + 22170 0.66 0.901711
Target:  5'- aGAGGuc-AGGGGCacCUCAGGGu--GCCu -3'
miRNA:   3'- -UUCCuucUUCCCG--GAGUCCCuauCGG- -5'
33341 5' -55.4 NC_007605.1 + 53842 0.66 0.908004
Target:  5'- -cGGGccAGGGcGGCCUCgAGGGG-AGCCu -3'
miRNA:   3'- uuCCU--UCUUcCCGGAG-UCCCUaUCGG- -5'
33341 5' -55.4 NC_007605.1 + 34304 0.66 0.914057
Target:  5'- aGAGGAAccAGGGaCCUCGGGcaccccagAGCCc -3'
miRNA:   3'- -UUCCUUcuUCCC-GGAGUCCcua-----UCGG- -5'
33341 5' -55.4 NC_007605.1 + 28166 0.66 0.914057
Target:  5'- aGAGGAAccAGGGaCCUCGGGcaccccagAGCCc -3'
miRNA:   3'- -UUCCUUcuUCCC-GGAGUCCcua-----UCGG- -5'
33341 5' -55.4 NC_007605.1 + 12822 0.66 0.914057
Target:  5'- aGAGGAAccAGGGaCCUCGGGcaccccagAGCCc -3'
miRNA:   3'- -UUCCUUcuUCCC-GGAGUCCcua-----UCGG- -5'
33341 5' -55.4 NC_007605.1 + 22028 0.66 0.914057
Target:  5'- aGAGGAAccAGGGaCCUCGGGcaccccagAGCCc -3'
miRNA:   3'- -UUCCUUcuUCCC-GGAGUCCcua-----UCGG- -5'
33341 5' -55.4 NC_007605.1 + 64702 0.66 0.908004
Target:  5'- cGGGGuGGGuguaGGGGUgaCGGGGGcUGGCCa -3'
miRNA:   3'- -UUCCuUCU----UCCCGgaGUCCCU-AUCGG- -5'
33341 5' -55.4 NC_007605.1 + 31377 0.66 0.901711
Target:  5'- aGAGGuc-AGGGGCacCUCAGGGu--GCCu -3'
miRNA:   3'- -UUCCuucUUCCCG--GAGUCCCuauCGG- -5'
33341 5' -55.4 NC_007605.1 + 6123 0.66 0.901711
Target:  5'- aGAGGAcauugggcAGGuguGGGCCaCGGGGcagcUGGCCa -3'
miRNA:   3'- -UUCCU--------UCUu--CCCGGaGUCCCu---AUCGG- -5'
33341 5' -55.4 NC_007605.1 + 15891 0.66 0.914057
Target:  5'- aGAGGAAccAGGGaCCUCGGGcaccccagAGCCc -3'
miRNA:   3'- -UUCCUUcuUCCC-GGAGUCCcua-----UCGG- -5'
33341 5' -55.4 NC_007605.1 + 45170 0.66 0.912267
Target:  5'- cAGGAGGcAGGGGCCcugcgaauggUCGccagccuccggucuGGuGAUGGCCa -3'
miRNA:   3'- uUCCUUC-UUCCCGG----------AGU--------------CC-CUAUCGG- -5'
33341 5' -55.4 NC_007605.1 + 106035 0.66 0.908004
Target:  5'- -cGGGAGAGGGGUCgUCGGG---AGUCu -3'
miRNA:   3'- uuCCUUCUUCCCGG-AGUCCcuaUCGG- -5'
33341 5' -55.4 NC_007605.1 + 91407 0.66 0.910454
Target:  5'- aGAGGcAGGcAGGGGCCgguuggcccaCGGGGAUccggguggauggaagGGCCu -3'
miRNA:   3'- -UUCC-UUC-UUCCCGGa---------GUCCCUA---------------UCGG- -5'
33341 5' -55.4 NC_007605.1 + 25239 0.66 0.901711
Target:  5'- aGAGGuc-AGGGGCacCUCAGGGu--GCCu -3'
miRNA:   3'- -UUCCuucUUCCCG--GAGUCCCuauCGG- -5'
33341 5' -55.4 NC_007605.1 + 28308 0.66 0.901711
Target:  5'- aGAGGuc-AGGGGCacCUCAGGGu--GCCu -3'
miRNA:   3'- -UUCCuucUUCCCG--GAGUCCCuauCGG- -5'
33341 5' -55.4 NC_007605.1 + 34446 0.66 0.901711
Target:  5'- aGAGGuc-AGGGGCacCUCAGGGu--GCCu -3'
miRNA:   3'- -UUCCuucUUCCCG--GAGUCCCuauCGG- -5'
33341 5' -55.4 NC_007605.1 + 19101 0.66 0.901711
Target:  5'- aGAGGuc-AGGGGCacCUCAGGGu--GCCu -3'
miRNA:   3'- -UUCCuucUUCCCG--GAGUCCCuauCGG- -5'
33341 5' -55.4 NC_007605.1 + 25097 0.66 0.914057
Target:  5'- aGAGGAAccAGGGaCCUCGGGcaccccagAGCCc -3'
miRNA:   3'- -UUCCUUcuUCCC-GGAGUCCcua-----UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.