miRNA display CGI


Results 41 - 60 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33341 5' -55.4 NC_007605.1 + 22170 0.66 0.901711
Target:  5'- aGAGGuc-AGGGGCacCUCAGGGu--GCCu -3'
miRNA:   3'- -UUCCuucUUCCCG--GAGUCCCuauCGG- -5'
33341 5' -55.4 NC_007605.1 + 19101 0.66 0.901711
Target:  5'- aGAGGuc-AGGGGCacCUCAGGGu--GCCu -3'
miRNA:   3'- -UUCCuucUUCCCG--GAGUCCCuauCGG- -5'
33341 5' -55.4 NC_007605.1 + 16032 0.66 0.901711
Target:  5'- aGAGGuc-AGGGGCacCUCAGGGu--GCCu -3'
miRNA:   3'- -UUCCuucUUCCCG--GAGUCCCuauCGG- -5'
33341 5' -55.4 NC_007605.1 + 23216 0.67 0.874194
Target:  5'- gGAGGggGcuGGGCCUCacccucGGGGAcc-CCu -3'
miRNA:   3'- -UUCCuuCuuCCCGGAG------UCCCUaucGG- -5'
33341 5' -55.4 NC_007605.1 + 17079 0.67 0.874194
Target:  5'- gGAGGggGcuGGGCCUCacccucGGGGAcc-CCu -3'
miRNA:   3'- -UUCCuuCuuCCCGGAG------UCCCUaucGG- -5'
33341 5' -55.4 NC_007605.1 + 14010 0.67 0.874194
Target:  5'- gGAGGggGcuGGGCCUCacccucGGGGAcc-CCu -3'
miRNA:   3'- -UUCCuuCuuCCCGGAG------UCCCUaucGG- -5'
33341 5' -55.4 NC_007605.1 + 35492 0.67 0.881417
Target:  5'- aGAGGggGcuGGGCCUCacccucGGGGAcc-CCu -3'
miRNA:   3'- -UUCCuuCuuCCCGGAG------UCCCUaucGG- -5'
33341 5' -55.4 NC_007605.1 + 84593 0.67 0.89518
Target:  5'- -uGGAGGAccacugugGGGGCCugggauUCAGGcGUGGCUc -3'
miRNA:   3'- uuCCUUCU--------UCCCGG------AGUCCcUAUCGG- -5'
33341 5' -55.4 NC_007605.1 + 62317 0.67 0.89518
Target:  5'- -uGGggGcGGGGCCggCGGGGGagagGGUg -3'
miRNA:   3'- uuCCuuCuUCCCGGa-GUCCCUa---UCGg -5'
33341 5' -55.4 NC_007605.1 + 82754 0.67 0.89518
Target:  5'- cAGGccacucGGGGGCCUgAGGGcagGGCCu -3'
miRNA:   3'- uUCCuuc---UUCCCGGAgUCCCua-UCGG- -5'
33341 5' -55.4 NC_007605.1 + 58125 0.67 0.89518
Target:  5'- -cGGAGGccGGGGCCgCAGaGGccggGGCCg -3'
miRNA:   3'- uuCCUUCu-UCCCGGaGUC-CCua--UCGG- -5'
33341 5' -55.4 NC_007605.1 + 29354 0.67 0.874194
Target:  5'- gGAGGggGcuGGGCCUCacccucGGGGAcc-CCu -3'
miRNA:   3'- -UUCCuuCuuCCCGGAG------UCCCUaucGG- -5'
33341 5' -55.4 NC_007605.1 + 114863 0.67 0.874194
Target:  5'- uGAGGAA--GGGGCCUCGgccuGGGGUaaGGUg -3'
miRNA:   3'- -UUCCUUcuUCCCGGAGU----CCCUA--UCGg -5'
33341 5' -55.4 NC_007605.1 + 134888 0.67 0.866749
Target:  5'- cGAGGAacuggcucAGcuuGGGGCCacCGGGGA-GGCCa -3'
miRNA:   3'- -UUCCU--------UCu--UCCCGGa-GUCCCUaUCGG- -5'
33341 5' -55.4 NC_007605.1 + 51057 0.67 0.89518
Target:  5'- --uGggGAAGGaGCUcCAGGGAaucuuugGGCCa -3'
miRNA:   3'- uucCuuCUUCC-CGGaGUCCCUa------UCGG- -5'
33341 5' -55.4 NC_007605.1 + 16602 0.67 0.866749
Target:  5'- cGGGAAGGAGaGGCCaggggagAGGGAaGGCg -3'
miRNA:   3'- uUCCUUCUUC-CCGGag-----UCCCUaUCGg -5'
33341 5' -55.4 NC_007605.1 + 171034 0.67 0.892501
Target:  5'- cAGGAAagacccccGggGGGCaUCGGGGGguggggcauggggGGCCg -3'
miRNA:   3'- uUCCUU--------CuuCCCGgAGUCCCUa------------UCGG- -5'
33341 5' -55.4 NC_007605.1 + 96041 0.67 0.881417
Target:  5'- cAGGAGGAGGGGCaggAGGGGcaggaggGGCa -3'
miRNA:   3'- uUCCUUCUUCCCGgagUCCCUa------UCGg -5'
33341 5' -55.4 NC_007605.1 + 96122 0.67 0.881417
Target:  5'- cAGGAGGAGGGGCaggAGGGGcaggaggGGCa -3'
miRNA:   3'- uUCCUUCUUCCCGgagUCCCUa------UCGg -5'
33341 5' -55.4 NC_007605.1 + 32423 0.67 0.874194
Target:  5'- gGAGGggGcuGGGCCUCacccucGGGGAcc-CCu -3'
miRNA:   3'- -UUCCuuCuuCCCGGAG------UCCCUaucGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.