miRNA display CGI


Results 21 - 40 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33341 5' -55.4 NC_007605.1 + 18940 0.73 0.579742
Target:  5'- cGGGcccGGAGGGUCUCAGaGGAUcGCCc -3'
miRNA:   3'- uUCCuu-CUUCCCGGAGUC-CCUAuCGG- -5'
33341 5' -55.4 NC_007605.1 + 143459 0.73 0.553251
Target:  5'- aGAGGAGGAGGGGCUagaggcccgcgagauUUGGGGuaggcggAGCCu -3'
miRNA:   3'- -UUCCUUCUUCCCGG---------------AGUCCCua-----UCGG- -5'
33341 5' -55.4 NC_007605.1 + 18409 0.73 0.579742
Target:  5'- cGGGGAGGggGGGaggCuGGGGUGGCa -3'
miRNA:   3'- -UUCCUUCuuCCCggaGuCCCUAUCGg -5'
33341 5' -55.4 NC_007605.1 + 21478 0.73 0.579742
Target:  5'- cGGGGAGGggGGGaggCuGGGGUGGCa -3'
miRNA:   3'- -UUCCUUCuuCCCggaGuCCCUAUCGg -5'
33341 5' -55.4 NC_007605.1 + 40643 0.73 0.553251
Target:  5'- aGAGGAGGAGGGGCUagagguccgcgagauUUGGGGuaggcggAGCCu -3'
miRNA:   3'- -UUCCUUCUUCCCGG---------------AGUCCCua-----UCGG- -5'
33341 5' -55.4 NC_007605.1 + 63321 0.73 0.569516
Target:  5'- cGAGGcAGGugGGGGCCUgAcGcGGAUGGCCa -3'
miRNA:   3'- -UUCCuUCU--UCCCGGAgU-C-CCUAUCGG- -5'
33341 5' -55.4 NC_007605.1 + 15340 0.73 0.579742
Target:  5'- cGGGGAGGggGGGaggCuGGGGUGGCa -3'
miRNA:   3'- -UUCCUUCuuCCCggaGuCCCUAUCGg -5'
33341 5' -55.4 NC_007605.1 + 15871 0.73 0.579742
Target:  5'- cGGGcccGGAGGGUCUCAGaGGAUcGCCc -3'
miRNA:   3'- uUCCuu-CUUCCCGGAGUC-CCUAuCGG- -5'
33341 5' -55.4 NC_007605.1 + 12802 0.73 0.579742
Target:  5'- cGGGcccGGAGGGUCUCAGaGGAUcGCCc -3'
miRNA:   3'- uUCCuu-CUUCCCGGAGUC-CCUAuCGG- -5'
33341 5' -55.4 NC_007605.1 + 12271 0.73 0.579742
Target:  5'- cGGGGAGGggGGGaggCuGGGGUGGCa -3'
miRNA:   3'- -UUCCUUCuuCCCggaGuCCCUAUCGg -5'
33341 5' -55.4 NC_007605.1 + 36055 0.73 0.590006
Target:  5'- gGAGGAuuuuGggGGGaaauCCUCAGGGugggcAGCCu -3'
miRNA:   3'- -UUCCUu---CuuCCC----GGAGUCCCua---UCGG- -5'
33341 5' -55.4 NC_007605.1 + 57988 0.73 0.549206
Target:  5'- gGAGGGAGcGGGGaCCcCGGGGGUgugaccuaGGCCg -3'
miRNA:   3'- -UUCCUUCuUCCC-GGaGUCCCUA--------UCGG- -5'
33341 5' -55.4 NC_007605.1 + 28146 0.73 0.579742
Target:  5'- cGGGcccGGAGGGUCUCAGaGGAUcGCCc -3'
miRNA:   3'- uUCCuu-CUUCCCGGAGUC-CCUAuCGG- -5'
33341 5' -55.4 NC_007605.1 + 30685 0.73 0.579742
Target:  5'- cGGGGAGGggGGGaggCuGGGGUGGCa -3'
miRNA:   3'- -UUCCUUCuuCCCggaGuCCCUAUCGg -5'
33341 5' -55.4 NC_007605.1 + 27616 0.73 0.579742
Target:  5'- cGGGGAGGggGGGaggCuGGGGUGGCa -3'
miRNA:   3'- -UUCCUUCuuCCCggaGuCCCUAUCGg -5'
33341 5' -55.4 NC_007605.1 + 25078 0.73 0.579742
Target:  5'- cGGGcccGGAGGGUCUCAGaGGAUcGCCc -3'
miRNA:   3'- uUCCuu-CUUCCCGGAGUC-CCUAuCGG- -5'
33341 5' -55.4 NC_007605.1 + 22009 0.73 0.579742
Target:  5'- cGGGcccGGAGGGUCUCAGaGGAUcGCCc -3'
miRNA:   3'- uUCCuu-CUUCCCGGAGUC-CCUAuCGG- -5'
33341 5' -55.4 NC_007605.1 + 24547 0.73 0.579742
Target:  5'- cGGGGAGGggGGGaggCuGGGGUGGCa -3'
miRNA:   3'- -UUCCUUCuuCCCggaGuCCCUAUCGg -5'
33341 5' -55.4 NC_007605.1 + 65502 0.72 0.600302
Target:  5'- cAGGGAuauGGccuccauGGGCCUCGGGGugcagGGCCu -3'
miRNA:   3'- -UUCCUu--CUu------CCCGGAGUCCCua---UCGG- -5'
33341 5' -55.4 NC_007605.1 + 40162 0.72 0.641647
Target:  5'- cAGGggGggGGGCagUgAGGGAggGGCg -3'
miRNA:   3'- uUCCuuCuuCCCGg-AgUCCCUa-UCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.