miRNA display CGI


Results 1 - 20 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33341 5' -55.4 NC_007605.1 + 91747 1.1 0.002565
Target:  5'- aAAGGAAGAAGGGCCUCAGGGAUAGCCg -3'
miRNA:   3'- -UUCCUUCUUCCCGGAGUCCCUAUCGG- -5'
33341 5' -55.4 NC_007605.1 + 61228 0.78 0.311233
Target:  5'- cGGGGAguaGGggGGGCUUaCAGGGGagGGCCg -3'
miRNA:   3'- -UUCCU---UCuuCCCGGA-GUCCCUa-UCGG- -5'
33341 5' -55.4 NC_007605.1 + 13405 0.76 0.415752
Target:  5'- gGGGGAcagagAGAAGGGCCgguggGGGGAUccgGGCCa -3'
miRNA:   3'- -UUCCU-----UCUUCCCGGag---UCCCUA---UCGG- -5'
33341 5' -55.4 NC_007605.1 + 19543 0.76 0.415752
Target:  5'- gGGGGAcagagAGAAGGGCCgguggGGGGAUccgGGCCa -3'
miRNA:   3'- -UUCCU-----UCUUCCCGGag---UCCCUA---UCGG- -5'
33341 5' -55.4 NC_007605.1 + 16474 0.76 0.415752
Target:  5'- gGGGGAcagagAGAAGGGCCgguggGGGGAUccgGGCCa -3'
miRNA:   3'- -UUCCU-----UCUUCCCGGag---UCCCUA---UCGG- -5'
33341 5' -55.4 NC_007605.1 + 25681 0.76 0.415752
Target:  5'- gGGGGAcagagAGAAGGGCCgguggGGGGAUccgGGCCa -3'
miRNA:   3'- -UUCCU-----UCUUCCCGGag---UCCCUA---UCGG- -5'
33341 5' -55.4 NC_007605.1 + 22612 0.76 0.415752
Target:  5'- gGGGGAcagagAGAAGGGCCgguggGGGGAUccgGGCCa -3'
miRNA:   3'- -UUCCU-----UCUUCCCGGag---UCCCUA---UCGG- -5'
33341 5' -55.4 NC_007605.1 + 28750 0.76 0.415752
Target:  5'- gGGGGAcagagAGAAGGGCCgguggGGGGAUccgGGCCa -3'
miRNA:   3'- -UUCCU-----UCUUCCCGGag---UCCCUA---UCGG- -5'
33341 5' -55.4 NC_007605.1 + 31819 0.76 0.415752
Target:  5'- gGGGGAcagagAGAAGGGCCgguggGGGGAUccgGGCCa -3'
miRNA:   3'- -UUCCU-----UCUUCCCGGag---UCCCUA---UCGG- -5'
33341 5' -55.4 NC_007605.1 + 34888 0.76 0.415752
Target:  5'- gGGGGAcagagAGAAGGGCCgguggGGGGAUccgGGCCa -3'
miRNA:   3'- -UUCCU-----UCUUCCCGGag---UCCCUA---UCGG- -5'
33341 5' -55.4 NC_007605.1 + 59668 0.75 0.43364
Target:  5'- aGAGGGAGggGaGGCagauCUCAGGGGcguGCCg -3'
miRNA:   3'- -UUCCUUCuuC-CCG----GAGUCCCUau-CGG- -5'
33341 5' -55.4 NC_007605.1 + 170771 0.75 0.44275
Target:  5'- gGGGGcuGggGGGCCgcgGGGGAaGGCCa -3'
miRNA:   3'- -UUCCuuCuuCCCGGag-UCCCUaUCGG- -5'
33341 5' -55.4 NC_007605.1 + 171308 0.75 0.44275
Target:  5'- gGGGGcuGggGGGCCgcgGGGGAaGGCCa -3'
miRNA:   3'- -UUCCuuCuuCCCGGag-UCCCUaUCGG- -5'
33341 5' -55.4 NC_007605.1 + 169711 0.75 0.44275
Target:  5'- gGGGGcuGggGGGCCgcgGGGGAaGGCCa -3'
miRNA:   3'- -UUCCuuCuuCCCGGag-UCCCUaUCGG- -5'
33341 5' -55.4 NC_007605.1 + 170248 0.75 0.44275
Target:  5'- gGGGGcuGggGGGCCgcgGGGGAaGGCCa -3'
miRNA:   3'- -UUCCuuCuuCCCGGag-UCCCUaUCGG- -5'
33341 5' -55.4 NC_007605.1 + 168779 0.75 0.451967
Target:  5'- aGAGGAgaGGggGGGuCCUCgAGGG--GGCCg -3'
miRNA:   3'- -UUCCU--UCuuCCC-GGAG-UCCCuaUCGG- -5'
33341 5' -55.4 NC_007605.1 + 37210 0.74 0.539135
Target:  5'- cAGGggGAGGGGCaggggCAGGGGcaggGGCa -3'
miRNA:   3'- uUCCuuCUUCCCGga---GUCCCUa---UCGg -5'
33341 5' -55.4 NC_007605.1 + 57988 0.73 0.549206
Target:  5'- gGAGGGAGcGGGGaCCcCGGGGGUgugaccuaGGCCg -3'
miRNA:   3'- -UUCCUUCuUCCC-GGaGUCCCUA--------UCGG- -5'
33341 5' -55.4 NC_007605.1 + 40643 0.73 0.553251
Target:  5'- aGAGGAGGAGGGGCUagagguccgcgagauUUGGGGuaggcggAGCCu -3'
miRNA:   3'- -UUCCUUCUUCCCGG---------------AGUCCCua-----UCGG- -5'
33341 5' -55.4 NC_007605.1 + 143459 0.73 0.553251
Target:  5'- aGAGGAGGAGGGGCUagaggcccgcgagauUUGGGGuaggcggAGCCu -3'
miRNA:   3'- -UUCCUUCUUCCCGG---------------AGUCCCua-----UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.