miRNA display CGI


Results 41 - 60 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33341 5' -55.4 NC_007605.1 + 12902 0.72 0.600302
Target:  5'- cGGGucuGggGGGCCUguGGuGGUgAGCCu -3'
miRNA:   3'- uUCCuu-CuuCCCGGAguCC-CUA-UCGG- -5'
33341 5' -55.4 NC_007605.1 + 34384 0.72 0.600302
Target:  5'- cGGGucuGggGGGCCUguGGuGGUgAGCCu -3'
miRNA:   3'- uUCCuu-CuuCCCGGAguCC-CUA-UCGG- -5'
33341 5' -55.4 NC_007605.1 + 31315 0.72 0.600302
Target:  5'- cGGGucuGggGGGCCUguGGuGGUgAGCCu -3'
miRNA:   3'- uUCCuu-CuuCCCGGAguCC-CUA-UCGG- -5'
33341 5' -55.4 NC_007605.1 + 28246 0.72 0.600302
Target:  5'- cGGGucuGggGGGCCUguGGuGGUgAGCCu -3'
miRNA:   3'- uUCCuu-CuuCCCGGAguCC-CUA-UCGG- -5'
33341 5' -55.4 NC_007605.1 + 25177 0.72 0.600302
Target:  5'- cGGGucuGggGGGCCUguGGuGGUgAGCCu -3'
miRNA:   3'- uUCCuu-CuuCCCGGAguCC-CUA-UCGG- -5'
33341 5' -55.4 NC_007605.1 + 22109 0.72 0.600302
Target:  5'- cGGGucuGggGGGCCUguGGuGGUgAGCCu -3'
miRNA:   3'- uUCCuu-CuuCCCGGAguCC-CUA-UCGG- -5'
33341 5' -55.4 NC_007605.1 + 15971 0.72 0.600302
Target:  5'- cGGGucuGggGGGCCUguGGuGGUgAGCCu -3'
miRNA:   3'- uUCCuu-CuuCCCGGAguCC-CUA-UCGG- -5'
33341 5' -55.4 NC_007605.1 + 22443 0.72 0.620957
Target:  5'- cGGGGAAGggGcgaggaaccGGCCUCuGGGGccGCCc -3'
miRNA:   3'- -UUCCUUCuuC---------CCGGAGuCCCUauCGG- -5'
33341 5' -55.4 NC_007605.1 + 13236 0.72 0.620957
Target:  5'- cGGGGAAGggGcgaggaaccGGCCUCuGGGGccGCCc -3'
miRNA:   3'- -UUCCUUCuuC---------CCGGAGuCCCUauCGG- -5'
33341 5' -55.4 NC_007605.1 + 16305 0.72 0.620957
Target:  5'- cGGGGAAGggGcgaggaaccGGCCUCuGGGGccGCCc -3'
miRNA:   3'- -UUCCUUCuuC---------CCGGAGuCCCUauCGG- -5'
33341 5' -55.4 NC_007605.1 + 31650 0.72 0.620957
Target:  5'- cGGGGAAGggGcgaggaaccGGCCUCuGGGGccGCCc -3'
miRNA:   3'- -UUCCUUCuuC---------CCGGAGuCCCUauCGG- -5'
33341 5' -55.4 NC_007605.1 + 19374 0.72 0.620957
Target:  5'- cGGGGAAGggGcgaggaaccGGCCUCuGGGGccGCCc -3'
miRNA:   3'- -UUCCUUCuuC---------CCGGAGuCCCUauCGG- -5'
33341 5' -55.4 NC_007605.1 + 25512 0.72 0.620957
Target:  5'- cGGGGAAGggGcgaggaaccGGCCUCuGGGGccGCCc -3'
miRNA:   3'- -UUCCUUCuuC---------CCGGAGuCCCUauCGG- -5'
33341 5' -55.4 NC_007605.1 + 28581 0.72 0.620957
Target:  5'- cGGGGAAGggGcgaggaaccGGCCUCuGGGGccGCCc -3'
miRNA:   3'- -UUCCUUCuuC---------CCGGAGuCCCUauCGG- -5'
33341 5' -55.4 NC_007605.1 + 34719 0.72 0.620957
Target:  5'- cGGGGAAGggGcgaggaaccGGCCUCuGGGGccGCCc -3'
miRNA:   3'- -UUCCUUCuuC---------CCGGAGuCCCUauCGG- -5'
33341 5' -55.4 NC_007605.1 + 136626 0.72 0.620957
Target:  5'- aAAGGggGGcagcGGGGCCgcgUAGGG-UAGCg -3'
miRNA:   3'- -UUCCuuCU----UCCCGGa--GUCCCuAUCGg -5'
33341 5' -55.4 NC_007605.1 + 40162 0.72 0.641647
Target:  5'- cAGGggGggGGGCagUgAGGGAggGGCg -3'
miRNA:   3'- uUCCuuCuuCCCGg-AgUCCCUa-UCGg -5'
33341 5' -55.4 NC_007605.1 + 35300 0.72 0.651985
Target:  5'- -uGGAcacAGggGGGC---GGGGAUGGCCc -3'
miRNA:   3'- uuCCU---UCuuCCCGgagUCCCUAUCGG- -5'
33341 5' -55.4 NC_007605.1 + 32231 0.72 0.651985
Target:  5'- -uGGAcacAGggGGGC---GGGGAUGGCCc -3'
miRNA:   3'- uuCCU---UCuuCCCGgagUCCCUAUCGG- -5'
33341 5' -55.4 NC_007605.1 + 29162 0.72 0.651985
Target:  5'- -uGGAcacAGggGGGC---GGGGAUGGCCc -3'
miRNA:   3'- uuCCU---UCuuCCCGgagUCCCUAUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.