miRNA display CGI


Results 61 - 80 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33341 5' -55.4 NC_007605.1 + 26094 0.72 0.651985
Target:  5'- -uGGAcacAGggGGGC---GGGGAUGGCCc -3'
miRNA:   3'- uuCCU---UCuuCCCGgagUCCCUAUCGG- -5'
33341 5' -55.4 NC_007605.1 + 23025 0.72 0.651985
Target:  5'- -uGGAcacAGggGGGC---GGGGAUGGCCc -3'
miRNA:   3'- uuCCU---UCuuCCCGgagUCCCUAUCGG- -5'
33341 5' -55.4 NC_007605.1 + 19956 0.72 0.651985
Target:  5'- -uGGAcacAGggGGGC---GGGGAUGGCCc -3'
miRNA:   3'- uuCCU---UCuuCCCGgagUCCCUAUCGG- -5'
33341 5' -55.4 NC_007605.1 + 16887 0.72 0.651985
Target:  5'- -uGGAcacAGggGGGC---GGGGAUGGCCc -3'
miRNA:   3'- uuCCU---UCuuCCCGgagUCCCUAUCGG- -5'
33341 5' -55.4 NC_007605.1 + 32231 0.72 0.651985
Target:  5'- -uGGAcacAGggGGGC---GGGGAUGGCCc -3'
miRNA:   3'- uuCCU---UCuuCCCGgagUCCCUAUCGG- -5'
33341 5' -55.4 NC_007605.1 + 52227 0.71 0.662306
Target:  5'- aGAGcugcuGAAGGGCCUCGGGGGcgaAGCa -3'
miRNA:   3'- -UUCcuu--CUUCCCGGAGUCCCUa--UCGg -5'
33341 5' -55.4 NC_007605.1 + 135186 0.71 0.662306
Target:  5'- cGGGgcGcAGGGCCUCugccGGGA-AGCCc -3'
miRNA:   3'- uUCCuuCuUCCCGGAGu---CCCUaUCGG- -5'
33341 5' -55.4 NC_007605.1 + 91582 0.71 0.682865
Target:  5'- gGAGGAAGAAagguGGGCUUUgAGGGGUGGg- -3'
miRNA:   3'- -UUCCUUCUU----CCCGGAG-UCCCUAUCgg -5'
33341 5' -55.4 NC_007605.1 + 115414 0.71 0.682865
Target:  5'- uGGGGAAGGcggcGGaGGCCgagCAGGGAcUGGCg -3'
miRNA:   3'- -UUCCUUCU----UC-CCGGa--GUCCCU-AUCGg -5'
33341 5' -55.4 NC_007605.1 + 37351 0.71 0.682865
Target:  5'- aGAGGGuugcGggGGGUCgCAGauGGGUGGCCa -3'
miRNA:   3'- -UUCCUu---CuuCCCGGaGUC--CCUAUCGG- -5'
33341 5' -55.4 NC_007605.1 + 63111 0.71 0.70224
Target:  5'- -uGGAGGggGGaGCUUCAGcuggucuGGGUGGCg -3'
miRNA:   3'- uuCCUUCuuCC-CGGAGUC-------CCUAUCGg -5'
33341 5' -55.4 NC_007605.1 + 61091 0.71 0.703254
Target:  5'- cGGGAAGAAGGGgCUguGGacauaGGCCg -3'
miRNA:   3'- uUCCUUCUUCCCgGAguCCcua--UCGG- -5'
33341 5' -55.4 NC_007605.1 + 151015 0.71 0.703254
Target:  5'- -cGGggGgcGGGCCcgcaUAGGGAaaAGCCa -3'
miRNA:   3'- uuCCuuCuuCCCGGa---GUCCCUa-UCGG- -5'
33341 5' -55.4 NC_007605.1 + 153924 0.7 0.71336
Target:  5'- cGGGGAGGGggccAGGGCCUgcagguuggCGGGGcucagGGCCu -3'
miRNA:   3'- -UUCCUUCU----UCCCGGA---------GUCCCua---UCGG- -5'
33341 5' -55.4 NC_007605.1 + 42653 0.7 0.71336
Target:  5'- cAGGGucauuGGGCCUgCGGGGAacugAGCCa -3'
miRNA:   3'- uUCCUucuu-CCCGGA-GUCCCUa---UCGG- -5'
33341 5' -55.4 NC_007605.1 + 148946 0.7 0.723397
Target:  5'- cGGGGAGcggcAAGGGCUcacCAGGGA-GGCCu -3'
miRNA:   3'- uUCCUUC----UUCCCGGa--GUCCCUaUCGG- -5'
33341 5' -55.4 NC_007605.1 + 60245 0.7 0.743219
Target:  5'- uGAGGGccggcaccAGGAGGcGCCUUcugAGGG-UGGCCg -3'
miRNA:   3'- -UUCCU--------UCUUCC-CGGAG---UCCCuAUCGG- -5'
33341 5' -55.4 NC_007605.1 + 48449 0.7 0.752014
Target:  5'- aGGGGAGGAgcucgugGGGGCCggGGGGcccugccugAGCCg -3'
miRNA:   3'- -UUCCUUCU-------UCCCGGagUCCCua-------UCGG- -5'
33341 5' -55.4 NC_007605.1 + 63081 0.7 0.762644
Target:  5'- gGGGGAGGuGGcGGUCgcCGGGGGUGGCa -3'
miRNA:   3'- -UUCCUUCuUC-CCGGa-GUCCCUAUCGg -5'
33341 5' -55.4 NC_007605.1 + 96014 0.7 0.762644
Target:  5'- cAGGAGGAGGGGCaggAGGGGcaggAGCa -3'
miRNA:   3'- uUCCUUCUUCCCGgagUCCCUa---UCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.