miRNA display CGI


Results 101 - 120 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33341 5' -55.4 NC_007605.1 + 170691 0.69 0.8
Target:  5'- cGGGGAucGGggGGGUC--GGGGGgcGCCg -3'
miRNA:   3'- -UUCCU--UCuuCCCGGagUCCCUauCGG- -5'
33341 5' -55.4 NC_007605.1 + 169632 0.69 0.8
Target:  5'- cGGGGAucGGggGGGUC--GGGGGgcGCCg -3'
miRNA:   3'- -UUCCU--UCuuCCCGGagUCCCUauCGG- -5'
33341 5' -55.4 NC_007605.1 + 157339 0.69 0.808974
Target:  5'- cGGGAuuguuGAGGGuGCC-CAGGGAcuucccgggGGCCg -3'
miRNA:   3'- uUCCUu----CUUCC-CGGaGUCCCUa--------UCGG- -5'
33341 5' -55.4 NC_007605.1 + 144604 0.69 0.808974
Target:  5'- -cGGggGuuGGGCC-CAGGGccaAGCUc -3'
miRNA:   3'- uuCCuuCuuCCCGGaGUCCCua-UCGG- -5'
33341 5' -55.4 NC_007605.1 + 161110 0.69 0.808974
Target:  5'- gGAGGGAGugugggguGGGCC-CGGGGc-AGCCc -3'
miRNA:   3'- -UUCCUUCuu------CCCGGaGUCCCuaUCGG- -5'
33341 5' -55.4 NC_007605.1 + 161488 0.69 0.808974
Target:  5'- aAGGGAGGAGGuGGCCUCcgcguAGGccgcuGCCg -3'
miRNA:   3'- -UUCCUUCUUC-CCGGAG-----UCCcuau-CGG- -5'
33341 5' -55.4 NC_007605.1 + 161007 0.69 0.812518
Target:  5'- gGAGGAGGGcAGGGCUcCGGGGGcagacgcaagcgccgUcuGGCCa -3'
miRNA:   3'- -UUCCUUCU-UCCCGGaGUCCCU---------------A--UCGG- -5'
33341 5' -55.4 NC_007605.1 + 3142 0.68 0.815159
Target:  5'- uAGGGGcacGGAGGGGCCgUCAGuccgcuccauggcuGGaAUGGCCc -3'
miRNA:   3'- -UUCCU---UCUUCCCGG-AGUC--------------CC-UAUCGG- -5'
33341 5' -55.4 NC_007605.1 + 16215 0.68 0.81691
Target:  5'- --cGGAGAGGGGCCUCuuuGGGcccucaaGUccAGCCc -3'
miRNA:   3'- uucCUUCUUCCCGGAGu--CCC-------UA--UCGG- -5'
33341 5' -55.4 NC_007605.1 + 28491 0.68 0.81691
Target:  5'- --cGGAGAGGGGCCUCuuuGGGcccucaaGUccAGCCc -3'
miRNA:   3'- uucCUUCUUCCCGGAGu--CCC-------UA--UCGG- -5'
33341 5' -55.4 NC_007605.1 + 13146 0.68 0.81691
Target:  5'- --cGGAGAGGGGCCUCuuuGGGcccucaaGUccAGCCc -3'
miRNA:   3'- uucCUUCUUCCCGGAGu--CCC-------UA--UCGG- -5'
33341 5' -55.4 NC_007605.1 + 19284 0.68 0.81691
Target:  5'- --cGGAGAGGGGCCUCuuuGGGcccucaaGUccAGCCc -3'
miRNA:   3'- uucCUUCUUCCCGGAGu--CCC-------UA--UCGG- -5'
33341 5' -55.4 NC_007605.1 + 25422 0.68 0.81691
Target:  5'- --cGGAGAGGGGCCUCuuuGGGcccucaaGUccAGCCc -3'
miRNA:   3'- uucCUUCUUCCCGGAGu--CCC-------UA--UCGG- -5'
33341 5' -55.4 NC_007605.1 + 22353 0.68 0.81691
Target:  5'- --cGGAGAGGGGCCUCuuuGGGcccucaaGUccAGCCc -3'
miRNA:   3'- uucCUUCUUCCCGGAGu--CCC-------UA--UCGG- -5'
33341 5' -55.4 NC_007605.1 + 31560 0.68 0.81691
Target:  5'- --cGGAGAGGGGCCUCuuuGGGcccucaaGUccAGCCc -3'
miRNA:   3'- uucCUUCUUCCCGGAGu--CCC-------UA--UCGG- -5'
33341 5' -55.4 NC_007605.1 + 34629 0.68 0.81691
Target:  5'- --cGGAGAGGGGCCUCuuuGGGcccucaaGUccAGCCc -3'
miRNA:   3'- uucCUUCUUCCCGGAGu--CCC-------UA--UCGG- -5'
33341 5' -55.4 NC_007605.1 + 57364 0.68 0.817784
Target:  5'- cAGGAGGAGGaGCC---GGGGUAGCUg -3'
miRNA:   3'- uUCCUUCUUCcCGGaguCCCUAUCGG- -5'
33341 5' -55.4 NC_007605.1 + 96158 0.68 0.817784
Target:  5'- cAGGAGGAGGGGCaggagCAGGaggGGCa -3'
miRNA:   3'- uUCCUUCUUCCCGga---GUCCcuaUCGg -5'
33341 5' -55.4 NC_007605.1 + 95942 0.68 0.817784
Target:  5'- cAGGAGGAGGGGCaggagCAGGaGGaggGGCa -3'
miRNA:   3'- uUCCUUCUUCCCGga---GUCC-CUa--UCGg -5'
33341 5' -55.4 NC_007605.1 + 95879 0.68 0.817784
Target:  5'- cAGGAGGAGGGGCaggagCAGGaGGaggGGCa -3'
miRNA:   3'- uUCCUUCUUCCCGga---GUCC-CUa--UCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.