Results 21 - 40 of 232 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
33341 | 5' | -55.4 | NC_007605.1 | + | 13042 | 0.66 | 0.919297 |
Target: 5'- -uGGAGGcgggcccGAGGGgCUCuGGGGU-GCCc -3' miRNA: 3'- uuCCUUC-------UUCCCgGAGuCCCUAuCGG- -5' |
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33341 | 5' | -55.4 | NC_007605.1 | + | 34524 | 0.66 | 0.919297 |
Target: 5'- -uGGAGGcgggcccGAGGGgCUCuGGGGU-GCCc -3' miRNA: 3'- uuCCUUC-------UUCCCgGAGuCCCUAuCGG- -5' |
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33341 | 5' | -55.4 | NC_007605.1 | + | 31235 | 0.66 | 0.914057 |
Target: 5'- aGAGGAAccAGGGaCCUCGGGcaccccagAGCCc -3' miRNA: 3'- -UUCCUUcuUCCC-GGAGUCCcua-----UCGG- -5' |
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33341 | 5' | -55.4 | NC_007605.1 | + | 25097 | 0.66 | 0.914057 |
Target: 5'- aGAGGAAccAGGGaCCUCGGGcaccccagAGCCc -3' miRNA: 3'- -UUCCUUcuUCCC-GGAGUCCcua-----UCGG- -5' |
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33341 | 5' | -55.4 | NC_007605.1 | + | 28166 | 0.66 | 0.914057 |
Target: 5'- aGAGGAAccAGGGaCCUCGGGcaccccagAGCCc -3' miRNA: 3'- -UUCCUUcuUCCC-GGAGUCCcua-----UCGG- -5' |
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33341 | 5' | -55.4 | NC_007605.1 | + | 34304 | 0.66 | 0.914057 |
Target: 5'- aGAGGAAccAGGGaCCUCGGGcaccccagAGCCc -3' miRNA: 3'- -UUCCUUcuUCCC-GGAGUCCcua-----UCGG- -5' |
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33341 | 5' | -55.4 | NC_007605.1 | + | 22028 | 0.66 | 0.914057 |
Target: 5'- aGAGGAAccAGGGaCCUCGGGcaccccagAGCCc -3' miRNA: 3'- -UUCCUUcuUCCC-GGAGUCCcua-----UCGG- -5' |
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33341 | 5' | -55.4 | NC_007605.1 | + | 12822 | 0.66 | 0.914057 |
Target: 5'- aGAGGAAccAGGGaCCUCGGGcaccccagAGCCc -3' miRNA: 3'- -UUCCUUcuUCCC-GGAGUCCcua-----UCGG- -5' |
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33341 | 5' | -55.4 | NC_007605.1 | + | 15891 | 0.66 | 0.914057 |
Target: 5'- aGAGGAAccAGGGaCCUCGGGcaccccagAGCCc -3' miRNA: 3'- -UUCCUUcuUCCC-GGAGUCCcua-----UCGG- -5' |
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33341 | 5' | -55.4 | NC_007605.1 | + | 45170 | 0.66 | 0.912267 |
Target: 5'- cAGGAGGcAGGGGCCcugcgaauggUCGccagccuccggucuGGuGAUGGCCa -3' miRNA: 3'- uUCCUUC-UUCCCGG----------AGU--------------CC-CUAUCGG- -5' |
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33341 | 5' | -55.4 | NC_007605.1 | + | 91407 | 0.66 | 0.910454 |
Target: 5'- aGAGGcAGGcAGGGGCCgguuggcccaCGGGGAUccggguggauggaagGGCCu -3' miRNA: 3'- -UUCC-UUC-UUCCCGGa---------GUCCCUA---------------UCGG- -5' |
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33341 | 5' | -55.4 | NC_007605.1 | + | 106035 | 0.66 | 0.908004 |
Target: 5'- -cGGGAGAGGGGUCgUCGGG---AGUCu -3' miRNA: 3'- uuCCUUCUUCCCGG-AGUCCcuaUCGG- -5' |
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33341 | 5' | -55.4 | NC_007605.1 | + | 64702 | 0.66 | 0.908004 |
Target: 5'- cGGGGuGGGuguaGGGGUgaCGGGGGcUGGCCa -3' miRNA: 3'- -UUCCuUCU----UCCCGgaGUCCCU-AUCGG- -5' |
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33341 | 5' | -55.4 | NC_007605.1 | + | 53842 | 0.66 | 0.908004 |
Target: 5'- -cGGGccAGGGcGGCCUCgAGGGG-AGCCu -3' miRNA: 3'- uuCCU--UCUUcCCGGAG-UCCCUaUCGG- -5' |
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33341 | 5' | -55.4 | NC_007605.1 | + | 34446 | 0.66 | 0.901711 |
Target: 5'- aGAGGuc-AGGGGCacCUCAGGGu--GCCu -3' miRNA: 3'- -UUCCuucUUCCCG--GAGUCCCuauCGG- -5' |
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33341 | 5' | -55.4 | NC_007605.1 | + | 159734 | 0.66 | 0.901711 |
Target: 5'- gAGGcGAGGAGGaGGCgUCccGGGAgAGCCc -3' miRNA: 3'- -UUC-CUUCUUC-CCGgAGu-CCCUaUCGG- -5' |
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33341 | 5' | -55.4 | NC_007605.1 | + | 16032 | 0.66 | 0.901711 |
Target: 5'- aGAGGuc-AGGGGCacCUCAGGGu--GCCu -3' miRNA: 3'- -UUCCuucUUCCCG--GAGUCCCuauCGG- -5' |
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33341 | 5' | -55.4 | NC_007605.1 | + | 19101 | 0.66 | 0.901711 |
Target: 5'- aGAGGuc-AGGGGCacCUCAGGGu--GCCu -3' miRNA: 3'- -UUCCuucUUCCCG--GAGUCCCuauCGG- -5' |
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33341 | 5' | -55.4 | NC_007605.1 | + | 31377 | 0.66 | 0.901711 |
Target: 5'- aGAGGuc-AGGGGCacCUCAGGGu--GCCu -3' miRNA: 3'- -UUCCuucUUCCCG--GAGUCCCuauCGG- -5' |
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33341 | 5' | -55.4 | NC_007605.1 | + | 25239 | 0.66 | 0.901711 |
Target: 5'- aGAGGuc-AGGGGCacCUCAGGGu--GCCu -3' miRNA: 3'- -UUCCuucUUCCCG--GAGUCCCuauCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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