miRNA display CGI


Results 41 - 60 of 232 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33341 5' -55.4 NC_007605.1 + 28308 0.66 0.901711
Target:  5'- aGAGGuc-AGGGGCacCUCAGGGu--GCCu -3'
miRNA:   3'- -UUCCuucUUCCCG--GAGUCCCuauCGG- -5'
33341 5' -55.4 NC_007605.1 + 31377 0.66 0.901711
Target:  5'- aGAGGuc-AGGGGCacCUCAGGGu--GCCu -3'
miRNA:   3'- -UUCCuucUUCCCG--GAGUCCCuauCGG- -5'
33341 5' -55.4 NC_007605.1 + 34446 0.66 0.901711
Target:  5'- aGAGGuc-AGGGGCacCUCAGGGu--GCCu -3'
miRNA:   3'- -UUCCuucUUCCCG--GAGUCCCuauCGG- -5'
33341 5' -55.4 NC_007605.1 + 151153 0.67 0.89518
Target:  5'- gGGGGGcgcauaGGAGGGGUauaUCuaGGAUAGCCg -3'
miRNA:   3'- -UUCCU------UCUUCCCGg--AGucCCUAUCGG- -5'
33341 5' -55.4 NC_007605.1 + 51057 0.67 0.89518
Target:  5'- --uGggGAAGGaGCUcCAGGGAaucuuugGGCCa -3'
miRNA:   3'- uucCuuCUUCC-CGGaGUCCCUa------UCGG- -5'
33341 5' -55.4 NC_007605.1 + 58125 0.67 0.89518
Target:  5'- -cGGAGGccGGGGCCgCAGaGGccggGGCCg -3'
miRNA:   3'- uuCCUUCu-UCCCGGaGUC-CCua--UCGG- -5'
33341 5' -55.4 NC_007605.1 + 50552 0.67 0.89518
Target:  5'- -cGGAccccAGGgcGGGuGCCUgGGGGAUgggaaAGCCg -3'
miRNA:   3'- uuCCU----UCU--UCC-CGGAgUCCCUA-----UCGG- -5'
33341 5' -55.4 NC_007605.1 + 62317 0.67 0.89518
Target:  5'- -uGGggGcGGGGCCggCGGGGGagagGGUg -3'
miRNA:   3'- uuCCuuCuUCCCGGa-GUCCCUa---UCGg -5'
33341 5' -55.4 NC_007605.1 + 82754 0.67 0.89518
Target:  5'- cAGGccacucGGGGGCCUgAGGGcagGGCCu -3'
miRNA:   3'- uUCCuuc---UUCCCGGAgUCCCua-UCGG- -5'
33341 5' -55.4 NC_007605.1 + 84593 0.67 0.89518
Target:  5'- -uGGAGGAccacugugGGGGCCugggauUCAGGcGUGGCUc -3'
miRNA:   3'- uuCCUUCU--------UCCCGG------AGUCCcUAUCGG- -5'
33341 5' -55.4 NC_007605.1 + 171034 0.67 0.892501
Target:  5'- cAGGAAagacccccGggGGGCaUCGGGGGguggggcauggggGGCCg -3'
miRNA:   3'- uUCCUU--------CuuCCCGgAGUCCCUa------------UCGG- -5'
33341 5' -55.4 NC_007605.1 + 169974 0.67 0.892501
Target:  5'- cAGGAAagacccccGggGGGCaUCGGGGGguggggcauggggGGCCg -3'
miRNA:   3'- uUCCUU--------CuuCCCGgAGUCCCUa------------UCGG- -5'
33341 5' -55.4 NC_007605.1 + 43225 0.67 0.888414
Target:  5'- -uGGAAGu-GGGCC-CAauGGGGUAGUa -3'
miRNA:   3'- uuCCUUCuuCCCGGaGU--CCCUAUCGg -5'
33341 5' -55.4 NC_007605.1 + 136754 0.67 0.888414
Target:  5'- cGAGGAGGAugaagaaggcggGGGGCUauUCccgGGGGAggacGCCa -3'
miRNA:   3'- -UUCCUUCU------------UCCCGG--AG---UCCCUau--CGG- -5'
33341 5' -55.4 NC_007605.1 + 35492 0.67 0.881417
Target:  5'- aGAGGggGcuGGGCCUCacccucGGGGAcc-CCu -3'
miRNA:   3'- -UUCCuuCuuCCCGGAG------UCCCUaucGG- -5'
33341 5' -55.4 NC_007605.1 + 96122 0.67 0.881417
Target:  5'- cAGGAGGAGGGGCaggAGGGGcaggaggGGCa -3'
miRNA:   3'- uUCCUUCUUCCCGgagUCCCUa------UCGg -5'
33341 5' -55.4 NC_007605.1 + 96041 0.67 0.881417
Target:  5'- cAGGAGGAGGGGCaggAGGGGcaggaggGGCa -3'
miRNA:   3'- uUCCUUCUUCCCGgagUCCCUa------UCGg -5'
33341 5' -55.4 NC_007605.1 + 51265 0.67 0.881417
Target:  5'- cAGGGGccaccuucucuaAGAGGGGgCUCugugggcuGGGAgGGCCa -3'
miRNA:   3'- -UUCCU------------UCUUCCCgGAGu-------CCCUaUCGG- -5'
33341 5' -55.4 NC_007605.1 + 96224 0.67 0.881417
Target:  5'- cAGGAGGAGGGGCaggAGGGGcaggaggGGCa -3'
miRNA:   3'- uUCCUUCUUCCCGgagUCCCUa------UCGg -5'
33341 5' -55.4 NC_007605.1 + 11018 0.67 0.879274
Target:  5'- -cGGGAGAAGGaauaacGCCUUAucuGGGAggagcgacggauuaUAGCCa -3'
miRNA:   3'- uuCCUUCUUCC------CGGAGU---CCCU--------------AUCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.