miRNA display CGI


Results 81 - 100 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33341 5' -55.4 NC_007605.1 + 137498 0.68 0.859089
Target:  5'- cAGGGAucgauuGGAaaAGGGCC-CAGGGucacUGGCUu -3'
miRNA:   3'- -UUCCU------UCU--UCCCGGaGUCCCu---AUCGG- -5'
33341 5' -55.4 NC_007605.1 + 12210 0.68 0.859089
Target:  5'- cAGGggGAcccgAGGGCCUUAGaGGcccaGGCg -3'
miRNA:   3'- uUCCuuCU----UCCCGGAGUC-CCua--UCGg -5'
33341 5' -55.4 NC_007605.1 + 5935 0.68 0.859089
Target:  5'- uGAGGAGGGcuGGGCC-CGGGGcUAGg- -3'
miRNA:   3'- -UUCCUUCUu-CCCGGaGUCCCuAUCgg -5'
33341 5' -55.4 NC_007605.1 + 76511 0.68 0.859089
Target:  5'- uAGGAguAGAAcugguccuGGGCUucagUCAGGGA-AGCCg -3'
miRNA:   3'- uUCCU--UCUU--------CCCGG----AGUCCCUaUCGG- -5'
33341 5' -55.4 NC_007605.1 + 69576 0.68 0.843147
Target:  5'- cGGGcauuuauGGAGGGUCUCcuucAGGGAU-GCCa -3'
miRNA:   3'- uUCCuu-----CUUCCCGGAG----UCCCUAuCGG- -5'
33341 5' -55.4 NC_007605.1 + 155406 0.68 0.843147
Target:  5'- uGGGGGAGGAGGGCUUCcccac-GGCCa -3'
miRNA:   3'- -UUCCUUCUUCCCGGAGucccuaUCGG- -5'
33341 5' -55.4 NC_007605.1 + 20147 0.68 0.843147
Target:  5'- gGAGGggGcuGGGCCUCaccucGGGGAcc-CCu -3'
miRNA:   3'- -UUCCuuCuuCCCGGAG-----UCCCUaucGG- -5'
33341 5' -55.4 NC_007605.1 + 24684 0.68 0.834878
Target:  5'- cGAGGAGGcgcccggaguGGGGCCggucggCuGGGcUGGCCg -3'
miRNA:   3'- -UUCCUUCu---------UCCCGGa-----GuCCCuAUCGG- -5'
33341 5' -55.4 NC_007605.1 + 21615 0.68 0.834878
Target:  5'- cGAGGAGGcgcccggaguGGGGCCggucggCuGGGcUGGCCg -3'
miRNA:   3'- -UUCCUUCu---------UCCCGGa-----GuCCCuAUCGG- -5'
33341 5' -55.4 NC_007605.1 + 18546 0.68 0.834878
Target:  5'- cGAGGAGGcgcccggaguGGGGCCggucggCuGGGcUGGCCg -3'
miRNA:   3'- -UUCCUUCu---------UCCCGGa-----GuCCCuAUCGG- -5'
33341 5' -55.4 NC_007605.1 + 12408 0.68 0.834878
Target:  5'- cGAGGAGGcgcccggaguGGGGCCggucggCuGGGcUGGCCg -3'
miRNA:   3'- -UUCCUUCu---------UCCCGGa-----GuCCCuAUCGG- -5'
33341 5' -55.4 NC_007605.1 + 15477 0.68 0.834878
Target:  5'- cGAGGAGGcgcccggaguGGGGCCggucggCuGGGcUGGCCg -3'
miRNA:   3'- -UUCCUUCu---------UCCCGGa-----GuCCCuAUCGG- -5'
33341 5' -55.4 NC_007605.1 + 33891 0.68 0.834878
Target:  5'- cGAGGAGGcgcccggaguGGGGCCggucggCuGGGcUGGCCg -3'
miRNA:   3'- -UUCCUUCu---------UCCCGGa-----GuCCCuAUCGG- -5'
33341 5' -55.4 NC_007605.1 + 30822 0.68 0.834878
Target:  5'- cGAGGAGGcgcccggaguGGGGCCggucggCuGGGcUGGCCg -3'
miRNA:   3'- -UUCCUUCu---------UCCCGGa-----GuCCCuAUCGG- -5'
33341 5' -55.4 NC_007605.1 + 27753 0.68 0.834878
Target:  5'- cGAGGAGGcgcccggaguGGGGCCggucggCuGGGcUGGCCg -3'
miRNA:   3'- -UUCCUUCu---------UCCCGGa-----GuCCCuAUCGG- -5'
33341 5' -55.4 NC_007605.1 + 31730 0.68 0.833202
Target:  5'- cGAGGGAGAGgcucGGGCCUggaGGGGAggagaggggacGCCu -3'
miRNA:   3'- -UUCCUUCUU----CCCGGAg--UCCCUau---------CGG- -5'
33341 5' -55.4 NC_007605.1 + 28661 0.68 0.833202
Target:  5'- cGAGGGAGAGgcucGGGCCUggaGGGGAggagaggggacGCCu -3'
miRNA:   3'- -UUCCUUCUU----CCCGGAg--UCCCUau---------CGG- -5'
33341 5' -55.4 NC_007605.1 + 25592 0.68 0.833202
Target:  5'- cGAGGGAGAGgcucGGGCCUggaGGGGAggagaggggacGCCu -3'
miRNA:   3'- -UUCCUUCUU----CCCGGAg--UCCCUau---------CGG- -5'
33341 5' -55.4 NC_007605.1 + 22523 0.68 0.833202
Target:  5'- cGAGGGAGAGgcucGGGCCUggaGGGGAggagaggggacGCCu -3'
miRNA:   3'- -UUCCUUCUU----CCCGGAg--UCCCUau---------CGG- -5'
33341 5' -55.4 NC_007605.1 + 16385 0.68 0.833202
Target:  5'- cGAGGGAGAGgcucGGGCCUggaGGGGAggagaggggacGCCu -3'
miRNA:   3'- -UUCCUUCUU----CCCGGAg--UCCCUau---------CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.