miRNA display CGI


Results 1 - 20 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33341 5' -55.4 NC_007605.1 + 2814 0.69 0.785323
Target:  5'- aAGGGAGGAgAGGGCCUacagcccacuauguuUaacGGGGAgcugggGGCCa -3'
miRNA:   3'- -UUCCUUCU-UCCCGGA---------------G---UCCCUa-----UCGG- -5'
33341 5' -55.4 NC_007605.1 + 3142 0.68 0.815159
Target:  5'- uAGGGGcacGGAGGGGCCgUCAGuccgcuccauggcuGGaAUGGCCc -3'
miRNA:   3'- -UUCCU---UCUUCCCGG-AGUC--------------CC-UAUCGG- -5'
33341 5' -55.4 NC_007605.1 + 5935 0.68 0.859089
Target:  5'- uGAGGAGGGcuGGGCC-CGGGGcUAGg- -3'
miRNA:   3'- -UUCCUUCUu-CCCGGaGUCCCuAUCgg -5'
33341 5' -55.4 NC_007605.1 + 6123 0.66 0.901711
Target:  5'- aGAGGAcauugggcAGGuguGGGCCaCGGGGcagcUGGCCa -3'
miRNA:   3'- -UUCCU--------UCUu--CCCGGaGUCCCu---AUCGG- -5'
33341 5' -55.4 NC_007605.1 + 11018 0.67 0.879274
Target:  5'- -cGGGAGAAGGaauaacGCCUUAucuGGGAggagcgacggauuaUAGCCa -3'
miRNA:   3'- uuCCUUCUUCC------CGGAGU---CCCU--------------AUCGG- -5'
33341 5' -55.4 NC_007605.1 + 12210 0.68 0.859089
Target:  5'- cAGGggGAcccgAGGGCCUUAGaGGcccaGGCg -3'
miRNA:   3'- uUCCuuCU----UCCCGGAGUC-CCua--UCGg -5'
33341 5' -55.4 NC_007605.1 + 12271 0.73 0.579742
Target:  5'- cGGGGAGGggGGGaggCuGGGGUGGCa -3'
miRNA:   3'- -UUCCUUCuuCCCggaGuCCCUAUCGg -5'
33341 5' -55.4 NC_007605.1 + 12408 0.68 0.834878
Target:  5'- cGAGGAGGcgcccggaguGGGGCCggucggCuGGGcUGGCCg -3'
miRNA:   3'- -UUCCUUCu---------UCCCGGa-----GuCCCuAUCGG- -5'
33341 5' -55.4 NC_007605.1 + 12802 0.73 0.579742
Target:  5'- cGGGcccGGAGGGUCUCAGaGGAUcGCCc -3'
miRNA:   3'- uUCCuu-CUUCCCGGAGUC-CCUAuCGG- -5'
33341 5' -55.4 NC_007605.1 + 12822 0.66 0.914057
Target:  5'- aGAGGAAccAGGGaCCUCGGGcaccccagAGCCc -3'
miRNA:   3'- -UUCCUUcuUCCC-GGAGUCCcua-----UCGG- -5'
33341 5' -55.4 NC_007605.1 + 12902 0.72 0.600302
Target:  5'- cGGGucuGggGGGCCUguGGuGGUgAGCCu -3'
miRNA:   3'- uUCCuu-CuuCCCGGAguCC-CUA-UCGG- -5'
33341 5' -55.4 NC_007605.1 + 13042 0.66 0.919297
Target:  5'- -uGGAGGcgggcccGAGGGgCUCuGGGGU-GCCc -3'
miRNA:   3'- uuCCUUC-------UUCCCgGAGuCCCUAuCGG- -5'
33341 5' -55.4 NC_007605.1 + 13146 0.68 0.81691
Target:  5'- --cGGAGAGGGGCCUCuuuGGGcccucaaGUccAGCCc -3'
miRNA:   3'- uucCUUCUUCCCGGAGu--CCC-------UA--UCGG- -5'
33341 5' -55.4 NC_007605.1 + 13236 0.72 0.620957
Target:  5'- cGGGGAAGggGcgaggaaccGGCCUCuGGGGccGCCc -3'
miRNA:   3'- -UUCCUUCuuC---------CCGGAGuCCCUauCGG- -5'
33341 5' -55.4 NC_007605.1 + 13316 0.68 0.833202
Target:  5'- cGAGGGAGAGgcucGGGCCUggaGGGGAggagaggggacGCCu -3'
miRNA:   3'- -UUCCUUCUU----CCCGGAg--UCCCUau---------CGG- -5'
33341 5' -55.4 NC_007605.1 + 13405 0.76 0.415752
Target:  5'- gGGGGAcagagAGAAGGGCCgguggGGGGAUccgGGCCa -3'
miRNA:   3'- -UUCCU-----UCUUCCCGGag---UCCCUA---UCGG- -5'
33341 5' -55.4 NC_007605.1 + 13533 0.67 0.866749
Target:  5'- cGGGAAGGAGaGGCCaggggagAGGGAaGGCg -3'
miRNA:   3'- uUCCUUCUUC-CCGGag-----UCCCUaUCGg -5'
33341 5' -55.4 NC_007605.1 + 13623 0.66 0.919867
Target:  5'- cAGGggGGAcugacaccGGGCCgcCGGGGucccuccGGCCg -3'
miRNA:   3'- uUCCuuCUU--------CCCGGa-GUCCCua-----UCGG- -5'
33341 5' -55.4 NC_007605.1 + 13818 0.72 0.651985
Target:  5'- -uGGAcacAGggGGGC---GGGGAUGGCCc -3'
miRNA:   3'- uuCCU---UCuuCCCGgagUCCCUAUCGG- -5'
33341 5' -55.4 NC_007605.1 + 14010 0.67 0.874194
Target:  5'- gGAGGggGcuGGGCCUCacccucGGGGAcc-CCu -3'
miRNA:   3'- -UUCCuuCuuCCCGGAG------UCCCUaucGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.