miRNA display CGI


Results 21 - 40 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33341 5' -55.4 NC_007605.1 + 161110 0.69 0.808974
Target:  5'- gGAGGGAGugugggguGGGCC-CGGGGc-AGCCc -3'
miRNA:   3'- -UUCCUUCuu------CCCGGaGUCCCuaUCGG- -5'
33341 5' -55.4 NC_007605.1 + 161007 0.69 0.812518
Target:  5'- gGAGGAGGGcAGGGCUcCGGGGGcagacgcaagcgccgUcuGGCCa -3'
miRNA:   3'- -UUCCUUCU-UCCCGGaGUCCCU---------------A--UCGG- -5'
33341 5' -55.4 NC_007605.1 + 160203 0.68 0.826421
Target:  5'- aGAGGAGGGcgcggucccGGGCC-CGGGGc-GGCCg -3'
miRNA:   3'- -UUCCUUCUu--------CCCGGaGUCCCuaUCGG- -5'
33341 5' -55.4 NC_007605.1 + 159734 0.66 0.901711
Target:  5'- gAGGcGAGGAGGaGGCgUCccGGGAgAGCCc -3'
miRNA:   3'- -UUC-CUUCUUC-CCGgAGu-CCCUaUCGG- -5'
33341 5' -55.4 NC_007605.1 + 157339 0.69 0.808974
Target:  5'- cGGGAuuguuGAGGGuGCC-CAGGGAcuucccgggGGCCg -3'
miRNA:   3'- uUCCUu----CUUCC-CGGaGUCCCUa--------UCGG- -5'
33341 5' -55.4 NC_007605.1 + 155406 0.68 0.843147
Target:  5'- uGGGGGAGGAGGGCUUCcccac-GGCCa -3'
miRNA:   3'- -UUCCUUCUUCCCGGAGucccuaUCGG- -5'
33341 5' -55.4 NC_007605.1 + 153924 0.7 0.71336
Target:  5'- cGGGGAGGGggccAGGGCCUgcagguuggCGGGGcucagGGCCu -3'
miRNA:   3'- -UUCCUUCU----UCCCGGA---------GUCCCua---UCGG- -5'
33341 5' -55.4 NC_007605.1 + 153733 0.69 0.772184
Target:  5'- cAGG-AGAAGgucuucucGGCCUcCAGGGAgaugggGGCCa -3'
miRNA:   3'- uUCCuUCUUC--------CCGGA-GUCCCUa-----UCGG- -5'
33341 5' -55.4 NC_007605.1 + 153542 0.66 0.925434
Target:  5'- ----uGGAAGGGCCgguGGGAgaggaggcUGGCCg -3'
miRNA:   3'- uuccuUCUUCCCGGaguCCCU--------AUCGG- -5'
33341 5' -55.4 NC_007605.1 + 151153 0.67 0.89518
Target:  5'- gGGGGGcgcauaGGAGGGGUauaUCuaGGAUAGCCg -3'
miRNA:   3'- -UUCCU------UCUUCCCGg--AGucCCUAUCGG- -5'
33341 5' -55.4 NC_007605.1 + 151015 0.71 0.703254
Target:  5'- -cGGggGgcGGGCCcgcaUAGGGAaaAGCCa -3'
miRNA:   3'- uuCCuuCuuCCCGGa---GUCCCUa-UCGG- -5'
33341 5' -55.4 NC_007605.1 + 148946 0.7 0.723397
Target:  5'- cGGGGAGcggcAAGGGCUcacCAGGGA-GGCCu -3'
miRNA:   3'- uUCCUUC----UUCCCGGa--GUCCCUaUCGG- -5'
33341 5' -55.4 NC_007605.1 + 146599 0.66 0.930755
Target:  5'- cAGGgcGu--GGCa-CAGGGGUGGCCg -3'
miRNA:   3'- uUCCuuCuucCCGgaGUCCCUAUCGG- -5'
33341 5' -55.4 NC_007605.1 + 144604 0.69 0.808974
Target:  5'- -cGGggGuuGGGCC-CAGGGccaAGCUc -3'
miRNA:   3'- uuCCuuCuuCCCGGaGUCCCua-UCGG- -5'
33341 5' -55.4 NC_007605.1 + 143905 0.66 0.919297
Target:  5'- gAAGGAGGAAGGGuggcgcaCCUUaaguaggguagGGGGGUAcCCc -3'
miRNA:   3'- -UUCCUUCUUCCC-------GGAG-----------UCCCUAUcGG- -5'
33341 5' -55.4 NC_007605.1 + 143459 0.73 0.553251
Target:  5'- aGAGGAGGAGGGGCUagaggcccgcgagauUUGGGGuaggcggAGCCu -3'
miRNA:   3'- -UUCCUUCUUCCCGG---------------AGUCCCua-----UCGG- -5'
33341 5' -55.4 NC_007605.1 + 137498 0.68 0.859089
Target:  5'- cAGGGAucgauuGGAaaAGGGCC-CAGGGucacUGGCUu -3'
miRNA:   3'- -UUCCU------UCU--UCCCGGaGUCCCu---AUCGG- -5'
33341 5' -55.4 NC_007605.1 + 136754 0.67 0.888414
Target:  5'- cGAGGAGGAugaagaaggcggGGGGCUauUCccgGGGGAggacGCCa -3'
miRNA:   3'- -UUCCUUCU------------UCCCGG--AG---UCCCUau--CGG- -5'
33341 5' -55.4 NC_007605.1 + 136626 0.72 0.620957
Target:  5'- aAAGGggGGcagcGGGGCCgcgUAGGG-UAGCg -3'
miRNA:   3'- -UUCCuuCU----UCCCGGa--GUCCCuAUCGg -5'
33341 5' -55.4 NC_007605.1 + 135186 0.71 0.662306
Target:  5'- cGGGgcGcAGGGCCUCugccGGGA-AGCCc -3'
miRNA:   3'- uUCCuuCuUCCCGGAGu---CCCUaUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.