miRNA display CGI


Results 41 - 60 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33341 5' -55.4 NC_007605.1 + 134888 0.67 0.866749
Target:  5'- cGAGGAacuggcucAGcuuGGGGCCacCGGGGA-GGCCa -3'
miRNA:   3'- -UUCCU--------UCu--UCCCGGa-GUCCCUaUCGG- -5'
33341 5' -55.4 NC_007605.1 + 118198 0.66 0.924888
Target:  5'- -uGGAGGAcagcgugGGGGCCa-AGGuGGUAGCg -3'
miRNA:   3'- uuCCUUCU-------UCCCGGagUCC-CUAUCGg -5'
33341 5' -55.4 NC_007605.1 + 116757 0.67 0.866749
Target:  5'- gGGGGGAGggGGGCac---GGAUgAGCCc -3'
miRNA:   3'- -UUCCUUCuuCCCGgagucCCUA-UCGG- -5'
33341 5' -55.4 NC_007605.1 + 115414 0.71 0.682865
Target:  5'- uGGGGAAGGcggcGGaGGCCgagCAGGGAcUGGCg -3'
miRNA:   3'- -UUCCUUCU----UC-CCGGa--GUCCCU-AUCGg -5'
33341 5' -55.4 NC_007605.1 + 114863 0.67 0.874194
Target:  5'- uGAGGAA--GGGGCCUCGgccuGGGGUaaGGUg -3'
miRNA:   3'- -UUCCUUcuUCCCGGAGU----CCCUA--UCGg -5'
33341 5' -55.4 NC_007605.1 + 108623 0.69 0.781596
Target:  5'- gAAGaAGGGAGGGCCUgCGGGGAaa-CCa -3'
miRNA:   3'- -UUCcUUCUUCCCGGA-GUCCCUaucGG- -5'
33341 5' -55.4 NC_007605.1 + 106035 0.66 0.908004
Target:  5'- -cGGGAGAGGGGUCgUCGGG---AGUCu -3'
miRNA:   3'- uuCCUUCUUCCCGG-AGUCCcuaUCGG- -5'
33341 5' -55.4 NC_007605.1 + 96515 0.69 0.790871
Target:  5'- cAGGAgcaGGAGGGGCaggagCAGGaGGUggaGGCCg -3'
miRNA:   3'- uUCCU---UCUUCCCGga---GUCC-CUA---UCGG- -5'
33341 5' -55.4 NC_007605.1 + 96404 0.7 0.762644
Target:  5'- cAGGAGGAGGGGCaggAGGGGcaggAGCa -3'
miRNA:   3'- uUCCUUCUUCCCGgagUCCCUa---UCGg -5'
33341 5' -55.4 NC_007605.1 + 96377 0.7 0.762644
Target:  5'- cAGGAGGAGGGGCaggAGGGGcaggAGCa -3'
miRNA:   3'- uUCCUUCUUCCCGgagUCCCUa---UCGg -5'
33341 5' -55.4 NC_007605.1 + 96224 0.67 0.881417
Target:  5'- cAGGAGGAGGGGCaggAGGGGcaggaggGGCa -3'
miRNA:   3'- uUCCUUCUUCCCGgagUCCCUa------UCGg -5'
33341 5' -55.4 NC_007605.1 + 96158 0.68 0.817784
Target:  5'- cAGGAGGAGGGGCaggagCAGGaggGGCa -3'
miRNA:   3'- uUCCUUCUUCCCGga---GUCCcuaUCGg -5'
33341 5' -55.4 NC_007605.1 + 96122 0.67 0.881417
Target:  5'- cAGGAGGAGGGGCaggAGGGGcaggaggGGCa -3'
miRNA:   3'- uUCCUUCUUCCCGgagUCCCUa------UCGg -5'
33341 5' -55.4 NC_007605.1 + 96095 0.7 0.762644
Target:  5'- cAGGAGGAGGGGCaggAGGGGcaggAGCa -3'
miRNA:   3'- uUCCUUCUUCCCGgagUCCCUa---UCGg -5'
33341 5' -55.4 NC_007605.1 + 96041 0.67 0.881417
Target:  5'- cAGGAGGAGGGGCaggAGGGGcaggaggGGCa -3'
miRNA:   3'- uUCCUUCUUCCCGgagUCCCUa------UCGg -5'
33341 5' -55.4 NC_007605.1 + 96014 0.7 0.762644
Target:  5'- cAGGAGGAGGGGCaggAGGGGcaggAGCa -3'
miRNA:   3'- uUCCUUCUUCCCGgagUCCCUa---UCGg -5'
33341 5' -55.4 NC_007605.1 + 95942 0.68 0.817784
Target:  5'- cAGGAGGAGGGGCaggagCAGGaGGaggGGCa -3'
miRNA:   3'- uUCCUUCUUCCCGga---GUCC-CUa--UCGg -5'
33341 5' -55.4 NC_007605.1 + 95879 0.68 0.817784
Target:  5'- cAGGAGGAGGGGCaggagCAGGaGGaggGGCa -3'
miRNA:   3'- uUCCUUCUUCCCGga---GUCC-CUa--UCGg -5'
33341 5' -55.4 NC_007605.1 + 91747 1.1 0.002565
Target:  5'- aAAGGAAGAAGGGCCUCAGGGAUAGCCg -3'
miRNA:   3'- -UUCCUUCUUCCCGGAGUCCCUAUCGG- -5'
33341 5' -55.4 NC_007605.1 + 91582 0.71 0.682865
Target:  5'- gGAGGAAGAAagguGGGCUUUgAGGGGUGGg- -3'
miRNA:   3'- -UUCCUUCUU----CCCGGAG-UCCCUAUCgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.