miRNA display CGI


Results 61 - 80 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33341 5' -55.4 NC_007605.1 + 91407 0.66 0.910454
Target:  5'- aGAGGcAGGcAGGGGCCgguuggcccaCGGGGAUccggguggauggaagGGCCu -3'
miRNA:   3'- -UUCC-UUC-UUCCCGGa---------GUCCCUA---------------UCGG- -5'
33341 5' -55.4 NC_007605.1 + 90411 0.67 0.866749
Target:  5'- uGGGGcucauGGAGGGGCggCAGcGGAUGGUg -3'
miRNA:   3'- uUCCU-----UCUUCCCGgaGUC-CCUAUCGg -5'
33341 5' -55.4 NC_007605.1 + 87606 0.66 0.930234
Target:  5'- ----cGGAAGGGCCcggccuuUCAGGGGU-GCUu -3'
miRNA:   3'- uuccuUCUUCCCGG-------AGUCCCUAuCGG- -5'
33341 5' -55.4 NC_007605.1 + 85257 0.69 0.781596
Target:  5'- -cGGcAGA--GGCCUCGGGGGgcGCCc -3'
miRNA:   3'- uuCCuUCUucCCGGAGUCCCUauCGG- -5'
33341 5' -55.4 NC_007605.1 + 85197 0.69 0.781596
Target:  5'- -cGGcAGA--GGCCUCGGGGGgcGCCc -3'
miRNA:   3'- uuCCuUCUucCCGGAGUCCCUauCGG- -5'
33341 5' -55.4 NC_007605.1 + 84593 0.67 0.89518
Target:  5'- -uGGAGGAccacugugGGGGCCugggauUCAGGcGUGGCUc -3'
miRNA:   3'- uuCCUUCU--------UCCCGG------AGUCCcUAUCGG- -5'
33341 5' -55.4 NC_007605.1 + 82754 0.67 0.89518
Target:  5'- cAGGccacucGGGGGCCUgAGGGcagGGCCu -3'
miRNA:   3'- uUCCuuc---UUCCCGGAgUCCCua-UCGG- -5'
33341 5' -55.4 NC_007605.1 + 76511 0.68 0.859089
Target:  5'- uAGGAguAGAAcugguccuGGGCUucagUCAGGGA-AGCCg -3'
miRNA:   3'- uUCCU--UCUU--------CCCGG----AGUCCCUaUCGG- -5'
33341 5' -55.4 NC_007605.1 + 72373 0.67 0.865993
Target:  5'- uGGGggGcAGGGUCUCGcGGGuccucuggauuagAUAGUCa -3'
miRNA:   3'- uUCCuuCuUCCCGGAGU-CCC-------------UAUCGG- -5'
33341 5' -55.4 NC_007605.1 + 69576 0.68 0.843147
Target:  5'- cGGGcauuuauGGAGGGUCUCcuucAGGGAU-GCCa -3'
miRNA:   3'- uUCCuu-----CUUCCCGGAG----UCCCUAuCGG- -5'
33341 5' -55.4 NC_007605.1 + 65502 0.72 0.600302
Target:  5'- cAGGGAuauGGccuccauGGGCCUCGGGGugcagGGCCu -3'
miRNA:   3'- -UUCCUu--CUu------CCCGGAGUCCCua---UCGG- -5'
33341 5' -55.4 NC_007605.1 + 64702 0.66 0.908004
Target:  5'- cGGGGuGGGuguaGGGGUgaCGGGGGcUGGCCa -3'
miRNA:   3'- -UUCCuUCU----UCCCGgaGUCCCU-AUCGG- -5'
33341 5' -55.4 NC_007605.1 + 63321 0.73 0.569516
Target:  5'- cGAGGcAGGugGGGGCCUgAcGcGGAUGGCCa -3'
miRNA:   3'- -UUCCuUCU--UCCCGGAgU-C-CCUAUCGG- -5'
33341 5' -55.4 NC_007605.1 + 63111 0.71 0.70224
Target:  5'- -uGGAGGggGGaGCUUCAGcuggucuGGGUGGCg -3'
miRNA:   3'- uuCCUUCuuCC-CGGAGUC-------CCUAUCGg -5'
33341 5' -55.4 NC_007605.1 + 63081 0.7 0.762644
Target:  5'- gGGGGAGGuGGcGGUCgcCGGGGGUGGCa -3'
miRNA:   3'- -UUCCUUCuUC-CCGGa-GUCCCUAUCGg -5'
33341 5' -55.4 NC_007605.1 + 62317 0.67 0.89518
Target:  5'- -uGGggGcGGGGCCggCGGGGGagagGGUg -3'
miRNA:   3'- uuCCuuCuUCCCGGa-GUCCCUa---UCGg -5'
33341 5' -55.4 NC_007605.1 + 61228 0.78 0.311233
Target:  5'- cGGGGAguaGGggGGGCUUaCAGGGGagGGCCg -3'
miRNA:   3'- -UUCCU---UCuuCCCGGA-GUCCCUa-UCGG- -5'
33341 5' -55.4 NC_007605.1 + 61091 0.71 0.703254
Target:  5'- cGGGAAGAAGGGgCUguGGacauaGGCCg -3'
miRNA:   3'- uUCCUUCUUCCCgGAguCCcua--UCGG- -5'
33341 5' -55.4 NC_007605.1 + 61008 0.68 0.826421
Target:  5'- aGAGGggGAAGgcaaGGCC--GGGGAcgcaggAGCCg -3'
miRNA:   3'- -UUCCuuCUUC----CCGGagUCCCUa-----UCGG- -5'
33341 5' -55.4 NC_007605.1 + 60933 0.69 0.8
Target:  5'- aGAGGAcGgcGGGCCcgggucagcUCGGGGGaagggagGGCCa -3'
miRNA:   3'- -UUCCUuCuuCCCGG---------AGUCCCUa------UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.