miRNA display CGI


Results 81 - 100 of 232 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33341 5' -55.4 NC_007605.1 + 60245 0.7 0.743219
Target:  5'- uGAGGGccggcaccAGGAGGcGCCUUcugAGGG-UGGCCg -3'
miRNA:   3'- -UUCCU--------UCUUCC-CGGAG---UCCCuAUCGG- -5'
33341 5' -55.4 NC_007605.1 + 59668 0.75 0.43364
Target:  5'- aGAGGGAGggGaGGCagauCUCAGGGGcguGCCg -3'
miRNA:   3'- -UUCCUUCuuC-CCG----GAGUCCCUau-CGG- -5'
33341 5' -55.4 NC_007605.1 + 58125 0.67 0.89518
Target:  5'- -cGGAGGccGGGGCCgCAGaGGccggGGCCg -3'
miRNA:   3'- uuCCUUCu-UCCCGGaGUC-CCua--UCGG- -5'
33341 5' -55.4 NC_007605.1 + 58040 0.67 0.866749
Target:  5'- aGGGGAGGGcuggaggccGGGGCCgCGGaGGccggGGCCg -3'
miRNA:   3'- -UUCCUUCU---------UCCCGGaGUC-CCua--UCGG- -5'
33341 5' -55.4 NC_007605.1 + 57988 0.73 0.549206
Target:  5'- gGAGGGAGcGGGGaCCcCGGGGGUgugaccuaGGCCg -3'
miRNA:   3'- -UUCCUUCuUCCC-GGaGUCCCUA--------UCGG- -5'
33341 5' -55.4 NC_007605.1 + 57412 0.66 0.925434
Target:  5'- gAAGaGGAGAAGGaGCC-CGGGcggcuGAUGGCg -3'
miRNA:   3'- -UUC-CUUCUUCC-CGGaGUCC-----CUAUCGg -5'
33341 5' -55.4 NC_007605.1 + 57364 0.68 0.817784
Target:  5'- cAGGAGGAGGaGCC---GGGGUAGCUg -3'
miRNA:   3'- uUCCUUCUUCcCGGaguCCCUAUCGG- -5'
33341 5' -55.4 NC_007605.1 + 54688 0.66 0.930755
Target:  5'- gAAGGAGGAggAGGGCgaggagCGGaGGAagcGGCCg -3'
miRNA:   3'- -UUCCUUCU--UCCCGga----GUC-CCUa--UCGG- -5'
33341 5' -55.4 NC_007605.1 + 53842 0.66 0.908004
Target:  5'- -cGGGccAGGGcGGCCUCgAGGGG-AGCCu -3'
miRNA:   3'- uuCCU--UCUUcCCGGAG-UCCCUaUCGG- -5'
33341 5' -55.4 NC_007605.1 + 52227 0.71 0.662306
Target:  5'- aGAGcugcuGAAGGGCCUCGGGGGcgaAGCa -3'
miRNA:   3'- -UUCcuu--CUUCCCGGAGUCCCUa--UCGg -5'
33341 5' -55.4 NC_007605.1 + 51265 0.67 0.881417
Target:  5'- cAGGGGccaccuucucuaAGAGGGGgCUCugugggcuGGGAgGGCCa -3'
miRNA:   3'- -UUCCU------------UCUUCCCgGAGu-------CCCUaUCGG- -5'
33341 5' -55.4 NC_007605.1 + 51057 0.67 0.89518
Target:  5'- --uGggGAAGGaGCUcCAGGGAaucuuugGGCCa -3'
miRNA:   3'- uucCuuCUUCC-CGGaGUCCCUa------UCGG- -5'
33341 5' -55.4 NC_007605.1 + 50552 0.67 0.89518
Target:  5'- -cGGAccccAGGgcGGGuGCCUgGGGGAUgggaaAGCCg -3'
miRNA:   3'- uuCCU----UCU--UCC-CGGAgUCCCUA-----UCGG- -5'
33341 5' -55.4 NC_007605.1 + 48449 0.7 0.752014
Target:  5'- aGGGGAGGAgcucgugGGGGCCggGGGGcccugccugAGCCg -3'
miRNA:   3'- -UUCCUUCU-------UCCCGGagUCCCua-------UCGG- -5'
33341 5' -55.4 NC_007605.1 + 45170 0.66 0.912267
Target:  5'- cAGGAGGcAGGGGCCcugcgaauggUCGccagccuccggucuGGuGAUGGCCa -3'
miRNA:   3'- uUCCUUC-UUCCCGG----------AGU--------------CC-CUAUCGG- -5'
33341 5' -55.4 NC_007605.1 + 43225 0.67 0.888414
Target:  5'- -uGGAAGu-GGGCC-CAauGGGGUAGUa -3'
miRNA:   3'- uuCCUUCuuCCCGGaGU--CCCUAUCGg -5'
33341 5' -55.4 NC_007605.1 + 42653 0.7 0.71336
Target:  5'- cAGGGucauuGGGCCUgCGGGGAacugAGCCa -3'
miRNA:   3'- uUCCUucuu-CCCGGA-GUCCCUa---UCGG- -5'
33341 5' -55.4 NC_007605.1 + 40643 0.73 0.553251
Target:  5'- aGAGGAGGAGGGGCUagagguccgcgagauUUGGGGuaggcggAGCCu -3'
miRNA:   3'- -UUCCUUCUUCCCGG---------------AGUCCCua-----UCGG- -5'
33341 5' -55.4 NC_007605.1 + 40162 0.72 0.641647
Target:  5'- cAGGggGggGGGCagUgAGGGAggGGCg -3'
miRNA:   3'- uUCCuuCuuCCCGg-AgUCCCUa-UCGg -5'
33341 5' -55.4 NC_007605.1 + 37351 0.71 0.682865
Target:  5'- aGAGGGuugcGggGGGUCgCAGauGGGUGGCCa -3'
miRNA:   3'- -UUCCUu---CuuCCCGGaGUC--CCUAUCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.