miRNA display CGI


Results 1 - 20 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33341 5' -55.4 NC_007605.1 + 96095 0.7 0.762644
Target:  5'- cAGGAGGAGGGGCaggAGGGGcaggAGCa -3'
miRNA:   3'- uUCCUUCUUCCCGgagUCCCUa---UCGg -5'
33341 5' -55.4 NC_007605.1 + 63111 0.71 0.70224
Target:  5'- -uGGAGGggGGaGCUUCAGcuggucuGGGUGGCg -3'
miRNA:   3'- uuCCUUCuuCC-CGGAGUC-------CCUAUCGg -5'
33341 5' -55.4 NC_007605.1 + 61091 0.71 0.703254
Target:  5'- cGGGAAGAAGGGgCUguGGacauaGGCCg -3'
miRNA:   3'- uUCCUUCUUCCCgGAguCCcua--UCGG- -5'
33341 5' -55.4 NC_007605.1 + 151015 0.71 0.703254
Target:  5'- -cGGggGgcGGGCCcgcaUAGGGAaaAGCCa -3'
miRNA:   3'- uuCCuuCuuCCCGGa---GUCCCUa-UCGG- -5'
33341 5' -55.4 NC_007605.1 + 42653 0.7 0.71336
Target:  5'- cAGGGucauuGGGCCUgCGGGGAacugAGCCa -3'
miRNA:   3'- uUCCUucuu-CCCGGA-GUCCCUa---UCGG- -5'
33341 5' -55.4 NC_007605.1 + 153924 0.7 0.71336
Target:  5'- cGGGGAGGGggccAGGGCCUgcagguuggCGGGGcucagGGCCu -3'
miRNA:   3'- -UUCCUUCU----UCCCGGA---------GUCCCua---UCGG- -5'
33341 5' -55.4 NC_007605.1 + 60245 0.7 0.743219
Target:  5'- uGAGGGccggcaccAGGAGGcGCCUUcugAGGG-UGGCCg -3'
miRNA:   3'- -UUCCU--------UCUUCC-CGGAG---UCCCuAUCGG- -5'
33341 5' -55.4 NC_007605.1 + 48449 0.7 0.752014
Target:  5'- aGGGGAGGAgcucgugGGGGCCggGGGGcccugccugAGCCg -3'
miRNA:   3'- -UUCCUUCU-------UCCCGGagUCCCua-------UCGG- -5'
33341 5' -55.4 NC_007605.1 + 96014 0.7 0.762644
Target:  5'- cAGGAGGAGGGGCaggAGGGGcaggAGCa -3'
miRNA:   3'- uUCCUUCUUCCCGgagUCCCUa---UCGg -5'
33341 5' -55.4 NC_007605.1 + 91582 0.71 0.682865
Target:  5'- gGAGGAAGAAagguGGGCUUUgAGGGGUGGg- -3'
miRNA:   3'- -UUCCUUCUU----CCCGGAG-UCCCUAUCgg -5'
33341 5' -55.4 NC_007605.1 + 135186 0.71 0.662306
Target:  5'- cGGGgcGcAGGGCCUCugccGGGA-AGCCc -3'
miRNA:   3'- uUCCuuCuUCCCGGAGu---CCCUaUCGG- -5'
33341 5' -55.4 NC_007605.1 + 52227 0.71 0.662306
Target:  5'- aGAGcugcuGAAGGGCCUCGGGGGcgaAGCa -3'
miRNA:   3'- -UUCcuu--CUUCCCGGAGUCCCUa--UCGg -5'
33341 5' -55.4 NC_007605.1 + 168779 0.75 0.451967
Target:  5'- aGAGGAgaGGggGGGuCCUCgAGGG--GGCCg -3'
miRNA:   3'- -UUCCU--UCuuCCC-GGAG-UCCCuaUCGG- -5'
33341 5' -55.4 NC_007605.1 + 37210 0.74 0.539135
Target:  5'- cAGGggGAGGGGCaggggCAGGGGcaggGGCa -3'
miRNA:   3'- uUCCuuCUUCCCGga---GUCCCUa---UCGg -5'
33341 5' -55.4 NC_007605.1 + 57988 0.73 0.549206
Target:  5'- gGAGGGAGcGGGGaCCcCGGGGGUgugaccuaGGCCg -3'
miRNA:   3'- -UUCCUUCuUCCC-GGaGUCCCUA--------UCGG- -5'
33341 5' -55.4 NC_007605.1 + 40643 0.73 0.553251
Target:  5'- aGAGGAGGAGGGGCUagagguccgcgagauUUGGGGuaggcggAGCCu -3'
miRNA:   3'- -UUCCUUCUUCCCGG---------------AGUCCCua-----UCGG- -5'
33341 5' -55.4 NC_007605.1 + 143459 0.73 0.553251
Target:  5'- aGAGGAGGAGGGGCUagaggcccgcgagauUUGGGGuaggcggAGCCu -3'
miRNA:   3'- -UUCCUUCUUCCCGG---------------AGUCCCua-----UCGG- -5'
33341 5' -55.4 NC_007605.1 + 63321 0.73 0.569516
Target:  5'- cGAGGcAGGugGGGGCCUgAcGcGGAUGGCCa -3'
miRNA:   3'- -UUCCuUCU--UCCCGGAgU-C-CCUAUCGG- -5'
33341 5' -55.4 NC_007605.1 + 65502 0.72 0.600302
Target:  5'- cAGGGAuauGGccuccauGGGCCUCGGGGugcagGGCCu -3'
miRNA:   3'- -UUCCUu--CUu------CCCGGAGUCCCua---UCGG- -5'
33341 5' -55.4 NC_007605.1 + 40162 0.72 0.641647
Target:  5'- cAGGggGggGGGCagUgAGGGAggGGCg -3'
miRNA:   3'- uUCCuuCuuCCCGg-AgUCCCUa-UCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.