miRNA display CGI


Results 41 - 60 of 232 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33341 5' -55.4 NC_007605.1 + 143459 0.73 0.553251
Target:  5'- aGAGGAGGAGGGGCUagaggcccgcgagauUUGGGGuaggcggAGCCu -3'
miRNA:   3'- -UUCCUUCUUCCCGG---------------AGUCCCua-----UCGG- -5'
33341 5' -55.4 NC_007605.1 + 40643 0.73 0.553251
Target:  5'- aGAGGAGGAGGGGCUagagguccgcgagauUUGGGGuaggcggAGCCu -3'
miRNA:   3'- -UUCCUUCUUCCCGG---------------AGUCCCua-----UCGG- -5'
33341 5' -55.4 NC_007605.1 + 57988 0.73 0.549206
Target:  5'- gGAGGGAGcGGGGaCCcCGGGGGUgugaccuaGGCCg -3'
miRNA:   3'- -UUCCUUCuUCCC-GGaGUCCCUA--------UCGG- -5'
33341 5' -55.4 NC_007605.1 + 37210 0.74 0.539135
Target:  5'- cAGGggGAGGGGCaggggCAGGGGcaggGGCa -3'
miRNA:   3'- uUCCuuCUUCCCGga---GUCCCUa---UCGg -5'
33341 5' -55.4 NC_007605.1 + 168779 0.75 0.451967
Target:  5'- aGAGGAgaGGggGGGuCCUCgAGGG--GGCCg -3'
miRNA:   3'- -UUCCU--UCuuCCC-GGAG-UCCCuaUCGG- -5'
33341 5' -55.4 NC_007605.1 + 151015 0.71 0.703254
Target:  5'- -cGGggGgcGGGCCcgcaUAGGGAaaAGCCa -3'
miRNA:   3'- uuCCuuCuuCCCGGa---GUCCCUa-UCGG- -5'
33341 5' -55.4 NC_007605.1 + 42653 0.7 0.71336
Target:  5'- cAGGGucauuGGGCCUgCGGGGAacugAGCCa -3'
miRNA:   3'- uUCCUucuu-CCCGGA-GUCCCUa---UCGG- -5'
33341 5' -55.4 NC_007605.1 + 171284 0.69 0.781596
Target:  5'- uGAGGggGcAGGGUCgCAGGGGguguGUCu -3'
miRNA:   3'- -UUCCuuCuUCCCGGaGUCCCUau--CGG- -5'
33341 5' -55.4 NC_007605.1 + 170746 0.69 0.781596
Target:  5'- uGAGGggGcAGGGUCgCAGGGGguguGUCu -3'
miRNA:   3'- -UUCCuuCuUCCCGGaGUCCCUau--CGG- -5'
33341 5' -55.4 NC_007605.1 + 170224 0.69 0.781596
Target:  5'- uGAGGggGcAGGGUCgCAGGGGguguGUCu -3'
miRNA:   3'- -UUCCuuCuUCCCGGaGUCCCUau--CGG- -5'
33341 5' -55.4 NC_007605.1 + 169686 0.69 0.781596
Target:  5'- uGAGGggGcAGGGUCgCAGGGGguguGUCu -3'
miRNA:   3'- -UUCCuuCuUCCCGGaGUCCCUau--CGG- -5'
33341 5' -55.4 NC_007605.1 + 153733 0.69 0.772184
Target:  5'- cAGG-AGAAGgucuucucGGCCUcCAGGGAgaugggGGCCa -3'
miRNA:   3'- uUCCuUCUUC--------CCGGA-GUCCCUa-----UCGG- -5'
33341 5' -55.4 NC_007605.1 + 63081 0.7 0.762644
Target:  5'- gGGGGAGGuGGcGGUCgcCGGGGGUGGCa -3'
miRNA:   3'- -UUCCUUCuUC-CCGGa-GUCCCUAUCGg -5'
33341 5' -55.4 NC_007605.1 + 96404 0.7 0.762644
Target:  5'- cAGGAGGAGGGGCaggAGGGGcaggAGCa -3'
miRNA:   3'- uUCCUUCUUCCCGgagUCCCUa---UCGg -5'
33341 5' -55.4 NC_007605.1 + 96377 0.7 0.762644
Target:  5'- cAGGAGGAGGGGCaggAGGGGcaggAGCa -3'
miRNA:   3'- uUCCUUCUUCCCGgagUCCCUa---UCGg -5'
33341 5' -55.4 NC_007605.1 + 96095 0.7 0.762644
Target:  5'- cAGGAGGAGGGGCaggAGGGGcaggAGCa -3'
miRNA:   3'- uUCCUUCUUCCCGgagUCCCUa---UCGg -5'
33341 5' -55.4 NC_007605.1 + 96014 0.7 0.762644
Target:  5'- cAGGAGGAGGGGCaggAGGGGcaggAGCa -3'
miRNA:   3'- uUCCUUCUUCCCGgagUCCCUa---UCGg -5'
33341 5' -55.4 NC_007605.1 + 48449 0.7 0.752014
Target:  5'- aGGGGAGGAgcucgugGGGGCCggGGGGcccugccugAGCCg -3'
miRNA:   3'- -UUCCUUCU-------UCCCGGagUCCCua-------UCGG- -5'
33341 5' -55.4 NC_007605.1 + 60245 0.7 0.743219
Target:  5'- uGAGGGccggcaccAGGAGGcGCCUUcugAGGG-UGGCCg -3'
miRNA:   3'- -UUCCU--------UCUUCC-CGGAG---UCCCuAUCGG- -5'
33341 5' -55.4 NC_007605.1 + 153924 0.7 0.71336
Target:  5'- cGGGGAGGGggccAGGGCCUgcagguuggCGGGGcucagGGCCu -3'
miRNA:   3'- -UUCCUUCU----UCCCGGA---------GUCCCua---UCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.