miRNA display CGI


Results 81 - 100 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33341 5' -55.4 NC_007605.1 + 22353 0.68 0.81691
Target:  5'- --cGGAGAGGGGCCUCuuuGGGcccucaaGUccAGCCc -3'
miRNA:   3'- uucCUUCUUCCCGGAGu--CCC-------UA--UCGG- -5'
33341 5' -55.4 NC_007605.1 + 25422 0.68 0.81691
Target:  5'- --cGGAGAGGGGCCUCuuuGGGcccucaaGUccAGCCc -3'
miRNA:   3'- uucCUUCUUCCCGGAGu--CCC-------UA--UCGG- -5'
33341 5' -55.4 NC_007605.1 + 28491 0.68 0.81691
Target:  5'- --cGGAGAGGGGCCUCuuuGGGcccucaaGUccAGCCc -3'
miRNA:   3'- uucCUUCUUCCCGGAGu--CCC-------UA--UCGG- -5'
33341 5' -55.4 NC_007605.1 + 31560 0.68 0.81691
Target:  5'- --cGGAGAGGGGCCUCuuuGGGcccucaaGUccAGCCc -3'
miRNA:   3'- uucCUUCUUCCCGGAGu--CCC-------UA--UCGG- -5'
33341 5' -55.4 NC_007605.1 + 34629 0.68 0.81691
Target:  5'- --cGGAGAGGGGCCUCuuuGGGcccucaaGUccAGCCc -3'
miRNA:   3'- uucCUUCUUCCCGGAGu--CCC-------UA--UCGG- -5'
33341 5' -55.4 NC_007605.1 + 57364 0.68 0.817784
Target:  5'- cAGGAGGAGGaGCC---GGGGUAGCUg -3'
miRNA:   3'- uUCCUUCUUCcCGGaguCCCUAUCGG- -5'
33341 5' -55.4 NC_007605.1 + 157339 0.69 0.808974
Target:  5'- cGGGAuuguuGAGGGuGCC-CAGGGAcuucccgggGGCCg -3'
miRNA:   3'- uUCCUu----CUUCC-CGGaGUCCCUa--------UCGG- -5'
33341 5' -55.4 NC_007605.1 + 60933 0.69 0.8
Target:  5'- aGAGGAcGgcGGGCCcgggucagcUCGGGGGaagggagGGCCa -3'
miRNA:   3'- -UUCCUuCuuCCCGG---------AGUCCCUa------UCGG- -5'
33341 5' -55.4 NC_007605.1 + 171229 0.69 0.8
Target:  5'- cGGGGAucGGggGGGUC--GGGGGgcGCCg -3'
miRNA:   3'- -UUCCU--UCuuCCCGGagUCCCUauCGG- -5'
33341 5' -55.4 NC_007605.1 + 170224 0.69 0.781596
Target:  5'- uGAGGggGcAGGGUCgCAGGGGguguGUCu -3'
miRNA:   3'- -UUCCuuCuUCCCGGaGUCCCUau--CGG- -5'
33341 5' -55.4 NC_007605.1 + 170746 0.69 0.781596
Target:  5'- uGAGGggGcAGGGUCgCAGGGGguguGUCu -3'
miRNA:   3'- -UUCCuuCuUCCCGGaGUCCCUau--CGG- -5'
33341 5' -55.4 NC_007605.1 + 171284 0.69 0.781596
Target:  5'- uGAGGggGcAGGGUCgCAGGGGguguGUCu -3'
miRNA:   3'- -UUCCuuCuUCCCGGaGUCCCUau--CGG- -5'
33341 5' -55.4 NC_007605.1 + 85197 0.69 0.781596
Target:  5'- -cGGcAGA--GGCCUCGGGGGgcGCCc -3'
miRNA:   3'- uuCCuUCUucCCGGAGUCCCUauCGG- -5'
33341 5' -55.4 NC_007605.1 + 85257 0.69 0.781596
Target:  5'- -cGGcAGA--GGCCUCGGGGGgcGCCc -3'
miRNA:   3'- uuCCuUCUucCCGGAGUCCCUauCGG- -5'
33341 5' -55.4 NC_007605.1 + 2814 0.69 0.785323
Target:  5'- aAGGGAGGAgAGGGCCUacagcccacuauguuUaacGGGGAgcugggGGCCa -3'
miRNA:   3'- -UUCCUUCU-UCCCGGA---------------G---UCCCUa-----UCGG- -5'
33341 5' -55.4 NC_007605.1 + 96515 0.69 0.790871
Target:  5'- cAGGAgcaGGAGGGGCaggagCAGGaGGUggaGGCCg -3'
miRNA:   3'- uUCCU---UCUUCCCGga---GUCC-CUA---UCGG- -5'
33341 5' -55.4 NC_007605.1 + 169632 0.69 0.8
Target:  5'- cGGGGAucGGggGGGUC--GGGGGgcGCCg -3'
miRNA:   3'- -UUCCU--UCuuCCCGGagUCCCUauCGG- -5'
33341 5' -55.4 NC_007605.1 + 170169 0.69 0.8
Target:  5'- cGGGGAucGGggGGGUC--GGGGGgcGCCg -3'
miRNA:   3'- -UUCCU--UCuuCCCGGagUCCCUauCGG- -5'
33341 5' -55.4 NC_007605.1 + 170691 0.69 0.8
Target:  5'- cGGGGAucGGggGGGUC--GGGGGgcGCCg -3'
miRNA:   3'- -UUCCU--UCuuCCCGGagUCCCUauCGG- -5'
33341 5' -55.4 NC_007605.1 + 54688 0.66 0.930755
Target:  5'- gAAGGAGGAggAGGGCgaggagCGGaGGAagcGGCCg -3'
miRNA:   3'- -UUCCUUCU--UCCCGga----GUC-CCUa--UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.