miRNA display CGI


Results 61 - 80 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33341 5' -55.4 NC_007605.1 + 22109 0.72 0.600302
Target:  5'- cGGGucuGggGGGCCUguGGuGGUgAGCCu -3'
miRNA:   3'- uUCCuu-CuuCCCGGAguCC-CUA-UCGG- -5'
33341 5' -55.4 NC_007605.1 + 34719 0.72 0.620957
Target:  5'- cGGGGAAGggGcgaggaaccGGCCUCuGGGGccGCCc -3'
miRNA:   3'- -UUCCUUCuuC---------CCGGAGuCCCUauCGG- -5'
33341 5' -55.4 NC_007605.1 + 22612 0.76 0.415752
Target:  5'- gGGGGAcagagAGAAGGGCCgguggGGGGAUccgGGCCa -3'
miRNA:   3'- -UUCCU-----UCUUCCCGGag---UCCCUA---UCGG- -5'
33341 5' -55.4 NC_007605.1 + 13405 0.76 0.415752
Target:  5'- gGGGGAcagagAGAAGGGCCgguggGGGGAUccgGGCCa -3'
miRNA:   3'- -UUCCU-----UCUUCCCGGag---UCCCUA---UCGG- -5'
33341 5' -55.4 NC_007605.1 + 170248 0.75 0.44275
Target:  5'- gGGGGcuGggGGGCCgcgGGGGAaGGCCa -3'
miRNA:   3'- -UUCCuuCuuCCCGGag-UCCCUaUCGG- -5'
33341 5' -55.4 NC_007605.1 + 33754 0.73 0.579742
Target:  5'- cGGGGAGGggGGGaggCuGGGGUGGCa -3'
miRNA:   3'- -UUCCUUCuuCCCggaGuCCCUAUCGg -5'
33341 5' -55.4 NC_007605.1 + 25078 0.73 0.579742
Target:  5'- cGGGcccGGAGGGUCUCAGaGGAUcGCCc -3'
miRNA:   3'- uUCCuu-CUUCCCGGAGUC-CCUAuCGG- -5'
33341 5' -55.4 NC_007605.1 + 21478 0.73 0.579742
Target:  5'- cGGGGAGGggGGGaggCuGGGGUGGCa -3'
miRNA:   3'- -UUCCUUCuuCCCggaGuCCCUAUCGg -5'
33341 5' -55.4 NC_007605.1 + 15340 0.73 0.579742
Target:  5'- cGGGGAGGggGGGaggCuGGGGUGGCa -3'
miRNA:   3'- -UUCCUUCuuCCCggaGuCCCUAUCGg -5'
33341 5' -55.4 NC_007605.1 + 36055 0.73 0.590006
Target:  5'- gGAGGAuuuuGggGGGaaauCCUCAGGGugggcAGCCu -3'
miRNA:   3'- -UUCCUu---CuuCCC----GGAGUCCCua---UCGG- -5'
33341 5' -55.4 NC_007605.1 + 31730 0.68 0.833202
Target:  5'- cGAGGGAGAGgcucGGGCCUggaGGGGAggagaggggacGCCu -3'
miRNA:   3'- -UUCCUUCUU----CCCGGAg--UCCCUau---------CGG- -5'
33341 5' -55.4 NC_007605.1 + 18348 0.68 0.826421
Target:  5'- cAGGggGAcccgAGGGCCUUAGa---GGCCa -3'
miRNA:   3'- uUCCuuCU----UCCCGGAGUCccuaUCGG- -5'
33341 5' -55.4 NC_007605.1 + 22443 0.72 0.620957
Target:  5'- cGGGGAAGggGcgaggaaccGGCCUCuGGGGccGCCc -3'
miRNA:   3'- -UUCCUUCuuC---------CCGGAGuCCCUauCGG- -5'
33341 5' -55.4 NC_007605.1 + 13236 0.72 0.620957
Target:  5'- cGGGGAAGggGcgaggaaccGGCCUCuGGGGccGCCc -3'
miRNA:   3'- -UUCCUUCuuC---------CCGGAGuCCCUauCGG- -5'
33341 5' -55.4 NC_007605.1 + 19956 0.72 0.651985
Target:  5'- -uGGAcacAGggGGGC---GGGGAUGGCCc -3'
miRNA:   3'- uuCCU---UCuuCCCGgagUCCCUAUCGG- -5'
33341 5' -55.4 NC_007605.1 + 115414 0.71 0.682865
Target:  5'- uGGGGAAGGcggcGGaGGCCgagCAGGGAcUGGCg -3'
miRNA:   3'- -UUCCUUCU----UC-CCGGa--GUCCCU-AUCGg -5'
33341 5' -55.4 NC_007605.1 + 171757 0.69 0.790871
Target:  5'- cGGGGGucuuuccuGggGGGCCuuugUCAGGGuu-GCCu -3'
miRNA:   3'- -UUCCUu-------CuuCCCGG----AGUCCCuauCGG- -5'
33341 5' -55.4 NC_007605.1 + 170159 0.69 0.790871
Target:  5'- cGGGGGucuuuccuGggGGGCCuuugUCAGGGuu-GCCu -3'
miRNA:   3'- -UUCCUu-------CuuCCCGG----AGUCCCuauCGG- -5'
33341 5' -55.4 NC_007605.1 + 160203 0.68 0.826421
Target:  5'- aGAGGAGGGcgcggucccGGGCC-CGGGGc-GGCCg -3'
miRNA:   3'- -UUCCUUCUu--------CCCGGaGUCCCuaUCGG- -5'
33341 5' -55.4 NC_007605.1 + 30624 0.68 0.826421
Target:  5'- cAGGggGAcccgAGGGCCUUAGa---GGCCa -3'
miRNA:   3'- uUCCuuCU----UCCCGGAGUCccuaUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.