Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33345 | 3' | -48.3 | NC_007605.1 | + | 4929 | 0.69 | 0.994822 |
Target: 5'- aCGGGuguucuUUCGCGAGguuaGgGACAACAcguUCCu -3' miRNA: 3'- -GUUCu-----AAGCGCUCa---CgCUGUUGU---AGG- -5' |
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33345 | 3' | -48.3 | NC_007605.1 | + | 48224 | 0.67 | 0.998898 |
Target: 5'- gGAGAUUCGCGAcagaGUuacaccaGCGACuGCA-CCu -3' miRNA: 3'- gUUCUAAGCGCU----CA-------CGCUGuUGUaGG- -5' |
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33345 | 3' | -48.3 | NC_007605.1 | + | 49067 | 0.66 | 0.999627 |
Target: 5'- gUAGGc--CGCGuuGUGCGGCAGCAcugCCc -3' miRNA: 3'- -GUUCuaaGCGCu-CACGCUGUUGUa--GG- -5' |
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33345 | 3' | -48.3 | NC_007605.1 | + | 59227 | 0.66 | 0.999705 |
Target: 5'- cCGGGGUcuuaCGCGGcuGgcgGCGGCAGCcgCCg -3' miRNA: 3'- -GUUCUAa---GCGCU--Ca--CGCUGUUGuaGG- -5' |
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33345 | 3' | -48.3 | NC_007605.1 | + | 63027 | 0.72 | 0.963538 |
Target: 5'- gCAGGccuccUCGCuGAGUGCGGCGGcCGUCUg -3' miRNA: 3'- -GUUCua---AGCG-CUCACGCUGUU-GUAGG- -5' |
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33345 | 3' | -48.3 | NC_007605.1 | + | 67305 | 0.7 | 0.989473 |
Target: 5'- aGGGAggcagCGCGGGUGUGgaGCAGCucAUCCc -3' miRNA: 3'- gUUCUaa---GCGCUCACGC--UGUUG--UAGG- -5' |
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33345 | 3' | -48.3 | NC_007605.1 | + | 101257 | 1.14 | 0.010347 |
Target: 5'- aCAAGAUUCGCGAGUGCGACAACAUCCu -3' miRNA: 3'- -GUUCUAAGCGCUCACGCUGUUGUAGG- -5' |
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33345 | 3' | -48.3 | NC_007605.1 | + | 103533 | 0.67 | 0.999266 |
Target: 5'- ------cCGCGAGcGCGACcgggggagaucauGGCAUCCg -3' miRNA: 3'- guucuaaGCGCUCaCGCUG-------------UUGUAGG- -5' |
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33345 | 3' | -48.3 | NC_007605.1 | + | 117561 | 0.66 | 0.999767 |
Target: 5'- uUAGGGUccgcccugUCGUGAGUcacgGCGGCGAU-UCCg -3' miRNA: 3'- -GUUCUA--------AGCGCUCA----CGCUGUUGuAGG- -5' |
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33345 | 3' | -48.3 | NC_007605.1 | + | 121331 | 0.66 | 0.999813 |
Target: 5'- aGGGAUUCaC-AGUGCuccgguauucauaGGCGGCAUCCg -3' miRNA: 3'- gUUCUAAGcGcUCACG-------------CUGUUGUAGG- -5' |
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33345 | 3' | -48.3 | NC_007605.1 | + | 122130 | 0.67 | 0.99892 |
Target: 5'- uGAGGaUUGCGcauaacaaAG-GUGGCAACAUCCu -3' miRNA: 3'- gUUCUaAGCGC--------UCaCGCUGUUGUAGG- -5' |
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33345 | 3' | -48.3 | NC_007605.1 | + | 157039 | 0.7 | 0.989473 |
Target: 5'- cCAGGGggCGCGAGUaGC-ACAugGUCUc -3' miRNA: 3'- -GUUCUaaGCGCUCA-CGcUGUugUAGG- -5' |
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33345 | 3' | -48.3 | NC_007605.1 | + | 164502 | 0.68 | 0.996789 |
Target: 5'- --uGGUUUGCGAG-GCugGGCGGCAUgCCa -3' miRNA: 3'- guuCUAAGCGCUCaCG--CUGUUGUA-GG- -5' |
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33345 | 3' | -48.3 | NC_007605.1 | + | 169207 | 0.71 | 0.986398 |
Target: 5'- aAAGAggCGCGGG-GCGcGCAACGUUg -3' miRNA: 3'- gUUCUaaGCGCUCaCGC-UGUUGUAGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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