Results 21 - 40 of 135 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33345 | 5' | -63.3 | NC_007605.1 | + | 142938 | 0.66 | 0.60394 |
Target: 5'- -aGGGCcggAACCCCGGacccGGCUGCaGCCg- -3' miRNA: 3'- caCCCG---UUGGGGUC----CCGGCGcUGGau -5' |
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33345 | 5' | -63.3 | NC_007605.1 | + | 142837 | 0.66 | 0.60394 |
Target: 5'- -aGGGCcggAACCCCGGacccGGCUGCaGCCg- -3' miRNA: 3'- caCCCG---UUGGGGUC----CCGGCGcUGGau -5' |
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33345 | 5' | -63.3 | NC_007605.1 | + | 143142 | 0.66 | 0.60394 |
Target: 5'- -aGGGCcggAACCCCGGacccGGCUGCaGCCg- -3' miRNA: 3'- caCCCG---UUGGGGUC----CCGGCGcUGGau -5' |
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33345 | 5' | -63.3 | NC_007605.1 | + | 60295 | 0.66 | 0.594164 |
Target: 5'- -cGGGCGcCCUCAGGcGCaGCGucGCCUAc -3' miRNA: 3'- caCCCGUuGGGGUCC-CGgCGC--UGGAU- -5' |
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33345 | 5' | -63.3 | NC_007605.1 | + | 155483 | 0.66 | 0.594164 |
Target: 5'- gGUGGGCGACCUCucGGUC-CGGCgUGa -3' miRNA: 3'- -CACCCGUUGGGGucCCGGcGCUGgAU- -5' |
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33345 | 5' | -63.3 | NC_007605.1 | + | 162248 | 0.66 | 0.594164 |
Target: 5'- cUGGacGCGGCCCugCAGGGCCGgguguaCGGCCg- -3' miRNA: 3'- cACC--CGUUGGG--GUCCCGGC------GCUGGau -5' |
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33345 | 5' | -63.3 | NC_007605.1 | + | 60955 | 0.66 | 0.594164 |
Target: 5'- -aGGGCGgggGCCCCugGGGGCUGuCGuCCc- -3' miRNA: 3'- caCCCGU---UGGGG--UCCCGGC-GCuGGau -5' |
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33345 | 5' | -63.3 | NC_007605.1 | + | 170837 | 0.66 | 0.594164 |
Target: 5'- ---cGCAGCCCCcGGGcCCGCgGACCc- -3' miRNA: 3'- caccCGUUGGGGuCCC-GGCG-CUGGau -5' |
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33345 | 5' | -63.3 | NC_007605.1 | + | 62543 | 0.66 | 0.584414 |
Target: 5'- -aGGGCcGCCuCCAGauGGCCGaGGCCg- -3' miRNA: 3'- caCCCGuUGG-GGUC--CCGGCgCUGGau -5' |
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33345 | 5' | -63.3 | NC_007605.1 | + | 55754 | 0.66 | 0.584414 |
Target: 5'- -gGGGCG--CCUGGGGCCGaGGCCa- -3' miRNA: 3'- caCCCGUugGGGUCCCGGCgCUGGau -5' |
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33345 | 5' | -63.3 | NC_007605.1 | + | 40251 | 0.66 | 0.577608 |
Target: 5'- -gGGGCAgccgcggcccagcgcGCCCCguucacgGGGGaggaCCGCGGCCg- -3' miRNA: 3'- caCCCGU---------------UGGGG-------UCCC----GGCGCUGGau -5' |
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33345 | 5' | -63.3 | NC_007605.1 | + | 8333 | 0.66 | 0.574696 |
Target: 5'- gGUGGGCGGgCCaagauaGGGGCgcgauugcUGCGAUCUGg -3' miRNA: 3'- -CACCCGUUgGGg-----UCCCG--------GCGCUGGAU- -5' |
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33345 | 5' | -63.3 | NC_007605.1 | + | 50367 | 0.66 | 0.574696 |
Target: 5'- gGUGGGCuGCCCCcgaggacGGGCgC-CGGCCg- -3' miRNA: 3'- -CACCCGuUGGGGu------CCCG-GcGCUGGau -5' |
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33345 | 5' | -63.3 | NC_007605.1 | + | 155397 | 0.66 | 0.565015 |
Target: 5'- -aGGGCuuCCCCAcGGCCaccaacgagGCuGACCUGa -3' miRNA: 3'- caCCCGuuGGGGUcCCGG---------CG-CUGGAU- -5' |
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33345 | 5' | -63.3 | NC_007605.1 | + | 89600 | 0.66 | 0.565015 |
Target: 5'- uUGGGUA--CCCAGgugauGGCCGCGGCUg- -3' miRNA: 3'- cACCCGUugGGGUC-----CCGGCGCUGGau -5' |
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33345 | 5' | -63.3 | NC_007605.1 | + | 3163 | 0.66 | 0.555377 |
Target: 5'- -cGGGCucggagaaauggGGCCggCCAGGGCCacGgGACCUGg -3' miRNA: 3'- caCCCG------------UUGG--GGUCCCGG--CgCUGGAU- -5' |
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33345 | 5' | -63.3 | NC_007605.1 | + | 4474 | 0.66 | 0.555377 |
Target: 5'- -cGGGU-GCCCgUGGGGUCGUGGCCa- -3' miRNA: 3'- caCCCGuUGGG-GUCCCGGCGCUGGau -5' |
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33345 | 5' | -63.3 | NC_007605.1 | + | 12209 | 0.66 | 0.555377 |
Target: 5'- -aGGGgGACCCgAGGGCCuuagaGGCCc- -3' miRNA: 3'- caCCCgUUGGGgUCCCGGcg---CUGGau -5' |
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33345 | 5' | -63.3 | NC_007605.1 | + | 170911 | 0.66 | 0.554416 |
Target: 5'- aUGGaGCGugacgaaggGCCCCAGGGCugaccccggcaaaCGUGACCc- -3' miRNA: 3'- cACC-CGU---------UGGGGUCCCG-------------GCGCUGGau -5' |
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33345 | 5' | -63.3 | NC_007605.1 | + | 171449 | 0.66 | 0.554416 |
Target: 5'- aUGGaGCGugacgaaggGCCCCAGGGCugaccccggcaaaCGUGACCc- -3' miRNA: 3'- cACC-CGU---------UGGGGUCCCG-------------GCGCUGGau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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