miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33349 3' -48.1 NC_007605.1 + 107370 0.68 0.997476
Target:  5'- uGGGGUgccUUGCCCuggaGACgCUgg-UCUUCu -3'
miRNA:   3'- gCCCCA---AACGGG----UUGaGAauaAGAAG- -5'
33349 3' -48.1 NC_007605.1 + 128144 0.69 0.993465
Target:  5'- gCGGGGgcaUUGCCCAGCUUgggcaccugUCg -3'
miRNA:   3'- -GCCCCa--AACGGGUUGAGaauaaga--AG- -5'
33349 3' -48.1 NC_007605.1 + 64912 0.69 0.992332
Target:  5'- aCGGGGcucUUUGUCCccgAGCUCU---UCUUCa -3'
miRNA:   3'- -GCCCC---AAACGGG---UUGAGAauaAGAAG- -5'
33349 3' -48.1 NC_007605.1 + 34271 0.73 0.943392
Target:  5'- cCGGGGUUgguucUGCCCcuCUCUcUGUcCUUCa -3'
miRNA:   3'- -GCCCCAA-----ACGGGuuGAGA-AUAaGAAG- -5'
33349 3' -48.1 NC_007605.1 + 31202 0.73 0.943392
Target:  5'- cCGGGGUUgguucUGCCCcuCUCUcUGUcCUUCa -3'
miRNA:   3'- -GCCCCAA-----ACGGGuuGAGA-AUAaGAAG- -5'
33349 3' -48.1 NC_007605.1 + 28133 0.73 0.943392
Target:  5'- cCGGGGUUgguucUGCCCcuCUCUcUGUcCUUCa -3'
miRNA:   3'- -GCCCCAA-----ACGGGuuGAGA-AUAaGAAG- -5'
33349 3' -48.1 NC_007605.1 + 25064 0.73 0.943392
Target:  5'- cCGGGGUUgguucUGCCCcuCUCUcUGUcCUUCa -3'
miRNA:   3'- -GCCCCAA-----ACGGGuuGAGA-AUAaGAAG- -5'
33349 3' -48.1 NC_007605.1 + 21995 0.73 0.943392
Target:  5'- cCGGGGUUgguucUGCCCcuCUCUcUGUcCUUCa -3'
miRNA:   3'- -GCCCCAA-----ACGGGuuGAGA-AUAaGAAG- -5'
33349 3' -48.1 NC_007605.1 + 18927 0.73 0.943392
Target:  5'- cCGGGGUUgguucUGCCCcuCUCUcUGUcCUUCa -3'
miRNA:   3'- -GCCCCAA-----ACGGGuuGAGA-AUAaGAAG- -5'
33349 3' -48.1 NC_007605.1 + 15858 0.73 0.943392
Target:  5'- cCGGGGUUgguucUGCCCcuCUCUcUGUcCUUCa -3'
miRNA:   3'- -GCCCCAA-----ACGGGuuGAGA-AUAaGAAG- -5'
33349 3' -48.1 NC_007605.1 + 12789 0.73 0.943392
Target:  5'- cCGGGGUUgguucUGCCCcuCUCUcUGUcCUUCa -3'
miRNA:   3'- -GCCCCAA-----ACGGGuuGAGA-AUAaGAAG- -5'
33349 3' -48.1 NC_007605.1 + 105258 1.1 0.01489
Target:  5'- cCGGGGUUUGCCCAACUCUUAUUCUUCc -3'
miRNA:   3'- -GCCCCAAACGGGUUGAGAAUAAGAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.