miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33349 5' -52.9 NC_007605.1 + 108043 0.66 0.980902
Target:  5'- gGGcGAAGggUGggGGUGGGugcaagaauuGGGGCUg- -3'
miRNA:   3'- -UC-CUUCuuACuaCCACCC----------CCUUGGug -5'
33349 5' -52.9 NC_007605.1 + 49903 0.66 0.978664
Target:  5'- gAGGAGGGG-GAUcc-GGaGGGGACCACu -3'
miRNA:   3'- -UCCUUCUUaCUAccaCC-CCCUUGGUG- -5'
33349 5' -52.9 NC_007605.1 + 162171 0.66 0.978664
Target:  5'- cAGGAacaucaagaucaAGAAcagGGUGGUcuucacGGGGGAgaauGCCGCc -3'
miRNA:   3'- -UCCU------------UCUUa--CUACCA------CCCCCU----UGGUG- -5'
33349 5' -52.9 NC_007605.1 + 54810 0.66 0.978664
Target:  5'- uGGAc-GAUGGUGGUGcGGcGGAgagaauggagGCCGCg -3'
miRNA:   3'- uCCUucUUACUACCAC-CC-CCU----------UGGUG- -5'
33349 5' -52.9 NC_007605.1 + 171229 0.66 0.976238
Target:  5'- -cGggGAucgGggGGgucgGGGGGcGCCGCg -3'
miRNA:   3'- ucCuuCUua-CuaCCa---CCCCCuUGGUG- -5'
33349 5' -52.9 NC_007605.1 + 170691 0.66 0.976238
Target:  5'- -cGggGAucgGggGGgucgGGGGGcGCCGCg -3'
miRNA:   3'- ucCuuCUua-CuaCCa---CCCCCuUGGUG- -5'
33349 5' -52.9 NC_007605.1 + 170169 0.66 0.976238
Target:  5'- -cGggGAucgGggGGgucgGGGGGcGCCGCg -3'
miRNA:   3'- ucCuuCUua-CuaCCa---CCCCCuUGGUG- -5'
33349 5' -52.9 NC_007605.1 + 101107 0.66 0.974689
Target:  5'- aAGGAGGAcUGAaaggcgucugucugGGUGGGaGAGcCCACg -3'
miRNA:   3'- -UCCUUCUuACUa-------------CCACCCcCUU-GGUG- -5'
33349 5' -52.9 NC_007605.1 + 137200 0.66 0.973616
Target:  5'- uGGuGAGAAguUGGUGGUGGGGGcgGAUgAg -3'
miRNA:   3'- uCC-UUCUU--ACUACCACCCCC--UUGgUg -5'
33349 5' -52.9 NC_007605.1 + 57429 0.66 0.97079
Target:  5'- cGGgcGGcUGAUGGcGGGGGcuGCUGCu -3'
miRNA:   3'- uCCuuCUuACUACCaCCCCCu-UGGUG- -5'
33349 5' -52.9 NC_007605.1 + 41086 0.67 0.968067
Target:  5'- gAGGAAGggUGGcgcaccuuaagguagGGUaGGGGGGuACCcCa -3'
miRNA:   3'- -UCCUUCuuACUa--------------CCA-CCCCCU-UGGuG- -5'
33349 5' -52.9 NC_007605.1 + 29111 0.67 0.967754
Target:  5'- uGGGAGGggUGGacgaGGcUGGgcccGGGAGCCGu -3'
miRNA:   3'- -UCCUUCuuACUa---CC-ACC----CCCUUGGUg -5'
33349 5' -52.9 NC_007605.1 + 137594 0.67 0.967754
Target:  5'- uGGGAGAcuaAUG-UGGUGGGGG--CUAUg -3'
miRNA:   3'- uCCUUCU---UACuACCACCCCCuuGGUG- -5'
33349 5' -52.9 NC_007605.1 + 59985 0.67 0.967754
Target:  5'- gGGGAuGAAgacaGGUGGUGGGcGGGcgucucGCCGg -3'
miRNA:   3'- -UCCUuCUUa---CUACCACCC-CCU------UGGUg -5'
33349 5' -52.9 NC_007605.1 + 100108 0.67 0.967754
Target:  5'- gGGGGcAGAAuuUGcgGccGGGGGAGCCAg -3'
miRNA:   3'- -UCCU-UCUU--ACuaCcaCCCCCUUGGUg -5'
33349 5' -52.9 NC_007605.1 + 107027 0.67 0.967754
Target:  5'- uGGGGAacAUGgcGGUGauGGGGACCACc -3'
miRNA:   3'- -UCCUUcuUACuaCCACc-CCCUUGGUG- -5'
33349 5' -52.9 NC_007605.1 + 143901 0.67 0.965828
Target:  5'- gAGGAAGggUGGcgcaccuuaaguagGGUaGGGGGGuACCcCa -3'
miRNA:   3'- -UCCUUCuuACUa-------------CCA-CCCCCU-UGGuG- -5'
33349 5' -52.9 NC_007605.1 + 89816 0.67 0.9645
Target:  5'- gAGGAGGAggGcgGGUGGc--AGCCGCg -3'
miRNA:   3'- -UCCUUCUuaCuaCCACCcccUUGGUG- -5'
33349 5' -52.9 NC_007605.1 + 55733 0.67 0.964162
Target:  5'- gAGGGAGAG-GcgGGagagaUGGGGGcgccuggggccgaGGCCACa -3'
miRNA:   3'- -UCCUUCUUaCuaCC-----ACCCCC-------------UUGGUG- -5'
33349 5' -52.9 NC_007605.1 + 41229 0.67 0.961023
Target:  5'- aGGGggGggUaGggGG-GGGaGGGAUUACa -3'
miRNA:   3'- -UCCuuCuuA-CuaCCaCCC-CCUUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.