miRNA display CGI


Results 21 - 40 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33351 3' -52.4 NC_007605.1 + 13488 0.66 0.989569
Target:  5'- gCCGGGGucccuccgGCugGcCUGGuggaccCGGGGAGGCCa -3'
miRNA:   3'- -GGUCCU--------UGugC-GACUc-----GCUCUUCUGG- -5'
33351 3' -52.4 NC_007605.1 + 19626 0.66 0.989569
Target:  5'- gCCGGGGucccuccgGCugGcCUGGuggaccCGGGGAGGCCa -3'
miRNA:   3'- -GGUCCU--------UGugC-GACUc-----GCUCUUCUGG- -5'
33351 3' -52.4 NC_007605.1 + 34971 0.66 0.989569
Target:  5'- gCCGGGGucccuccgGCugGcCUGGuggaccCGGGGAGGCCa -3'
miRNA:   3'- -GGUCCU--------UGugC-GACUc-----GCUCUUCUGG- -5'
33351 3' -52.4 NC_007605.1 + 98453 0.66 0.989569
Target:  5'- gCAGacAUugGCUGGGCGuGGuuuacuGACCa -3'
miRNA:   3'- gGUCcuUGugCGACUCGCuCUu-----CUGG- -5'
33351 3' -52.4 NC_007605.1 + 48814 0.66 0.989569
Target:  5'- gCCAGaGGCugGCUGAGCcaccGAGcGCCc -3'
miRNA:   3'- -GGUCcUUGugCGACUCGcu--CUUcUGG- -5'
33351 3' -52.4 NC_007605.1 + 37197 0.66 0.989569
Target:  5'- gCCGGGGACAgaGCaGGGgGAGggG-Ca -3'
miRNA:   3'- -GGUCCUUGUg-CGaCUCgCUCuuCuGg -5'
33351 3' -52.4 NC_007605.1 + 164975 0.66 0.989569
Target:  5'- cCCGuGAGCugGcCUGA-CGAGAccaugAGGCCa -3'
miRNA:   3'- -GGUcCUUGugC-GACUcGCUCU-----UCUGG- -5'
33351 3' -52.4 NC_007605.1 + 25764 0.66 0.989569
Target:  5'- gCCGGGGucccuccgGCugGcCUGGuggaccCGGGGAGGCCa -3'
miRNA:   3'- -GGUCCU--------UGugC-GACUc-----GCUCUUCUGG- -5'
33351 3' -52.4 NC_007605.1 + 19332 0.66 0.989569
Target:  5'- gCCGGGGucccuccgGCugGcCUGGGaccCGGGGAGGCa -3'
miRNA:   3'- -GGUCCU--------UGugC-GACUC---GCUCUUCUGg -5'
33351 3' -52.4 NC_007605.1 + 16557 0.66 0.989569
Target:  5'- gCCGGGGucccuccgGCugGcCUGGuggaccCGGGGAGGCCa -3'
miRNA:   3'- -GGUCCU--------UGugC-GACUc-----GCUCUUCUGG- -5'
33351 3' -52.4 NC_007605.1 + 31902 0.66 0.989569
Target:  5'- gCCGGGGucccuccgGCugGcCUGGuggaccCGGGGAGGCCa -3'
miRNA:   3'- -GGUCCU--------UGugC-GACUc-----GCUCUUCUGG- -5'
33351 3' -52.4 NC_007605.1 + 28833 0.66 0.989569
Target:  5'- gCCGGGGucccuccgGCugGcCUGGuggaccCGGGGAGGCCa -3'
miRNA:   3'- -GGUCCU--------UGugC-GACUc-----GCUCUUCUGG- -5'
33351 3' -52.4 NC_007605.1 + 31608 0.66 0.989569
Target:  5'- gCCGGGGucccuccgGCugGcCUGGGaccCGGGGAGGCa -3'
miRNA:   3'- -GGUCCU--------UGugC-GACUC---GCUCUUCUGg -5'
33351 3' -52.4 NC_007605.1 + 34677 0.66 0.989569
Target:  5'- gCCGGGGucccuccgGCugGcCUGGGaccCGGGGAGGCa -3'
miRNA:   3'- -GGUCCU--------UGugC-GACUC---GCUCUUCUGg -5'
33351 3' -52.4 NC_007605.1 + 25470 0.66 0.989569
Target:  5'- gCCGGGGucccuccgGCugGcCUGGGaccCGGGGAGGCa -3'
miRNA:   3'- -GGUCCU--------UGugC-GACUC---GCUCUUCUGg -5'
33351 3' -52.4 NC_007605.1 + 22401 0.66 0.989569
Target:  5'- gCCGGGGucccuccgGCugGcCUGGGaccCGGGGAGGCa -3'
miRNA:   3'- -GGUCCU--------UGugC-GACUC---GCUCUUCUGg -5'
33351 3' -52.4 NC_007605.1 + 16263 0.66 0.989569
Target:  5'- gCCGGGGucccuccgGCugGcCUGGGaccCGGGGAGGCa -3'
miRNA:   3'- -GGUCCU--------UGugC-GACUC---GCUCUUCUGg -5'
33351 3' -52.4 NC_007605.1 + 28539 0.66 0.989569
Target:  5'- gCCGGGGucccuccgGCugGcCUGGGaccCGGGGAGGCa -3'
miRNA:   3'- -GGUCCU--------UGugC-GACUC---GCUCUUCUGg -5'
33351 3' -52.4 NC_007605.1 + 153135 0.66 0.989569
Target:  5'- gCAuGGGAgGCGCggcgacGAGCGGGAuagcaGGACg -3'
miRNA:   3'- gGU-CCUUgUGCGa-----CUCGCUCU-----UCUGg -5'
33351 3' -52.4 NC_007605.1 + 104157 0.66 0.988745
Target:  5'- cCCGGGAccuCAUGCaGAGCcucuuucugaccucgGGGAAGAUg -3'
miRNA:   3'- -GGUCCUu--GUGCGaCUCG---------------CUCUUCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.