Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33351 | 5' | -53.8 | NC_007605.1 | + | 68970 | 0.7 | 0.788729 |
Target: 5'- cAGGC-CCCCAGGgACAGGUg----- -3' miRNA: 3'- uUCCGuGGGGUCCaUGUCCAaacauu -5' |
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33351 | 5' | -53.8 | NC_007605.1 | + | 82111 | 0.67 | 0.915138 |
Target: 5'- -cGGUACCCCAGGUGCccGGa------ -3' miRNA: 3'- uuCCGUGGGGUCCAUGu-CCaaacauu -5' |
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33351 | 5' | -53.8 | NC_007605.1 | + | 90313 | 0.66 | 0.942129 |
Target: 5'- cGGGGCAgCCaCuGGUGCAGGc-UGUGGa -3' miRNA: 3'- -UUCCGUgGG-GuCCAUGUCCaaACAUU- -5' |
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33351 | 5' | -53.8 | NC_007605.1 | + | 90713 | 0.68 | 0.888957 |
Target: 5'- aAAGGCACCU--GGUAUGGGUcaggUGUAAa -3' miRNA: 3'- -UUCCGUGGGguCCAUGUCCAa---ACAUU- -5' |
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33351 | 5' | -53.8 | NC_007605.1 | + | 107042 | 0.76 | 0.460702 |
Target: 5'- aGGGGUACCCCAGGUugGGGaacauggcgGUGAu -3' miRNA: 3'- -UUCCGUGGGGUCCAugUCCaaa------CAUU- -5' |
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33351 | 5' | -53.8 | NC_007605.1 | + | 107552 | 1.03 | 0.008593 |
Target: 5'- cAAGGCACCCCAGGUACAGGUUUGUAAc -3' miRNA: 3'- -UUCCGUGGGGUCCAUGUCCAAACAUU- -5' |
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33351 | 5' | -53.8 | NC_007605.1 | + | 108157 | 0.66 | 0.937244 |
Target: 5'- -cGGguCCgCCGGGUucuCAGGggUGUAGu -3' miRNA: 3'- uuCCguGG-GGUCCAu--GUCCaaACAUU- -5' |
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33351 | 5' | -53.8 | NC_007605.1 | + | 112068 | 0.67 | 0.902549 |
Target: 5'- cAGGCACCagggAGGUcCAGGUUUGg-- -3' miRNA: 3'- uUCCGUGGgg--UCCAuGUCCAAACauu -5' |
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33351 | 5' | -53.8 | NC_007605.1 | + | 131563 | 0.67 | 0.902549 |
Target: 5'- aGGGGCACCUuccaaaaaUAGGgaacagGCAGGUUUGa-- -3' miRNA: 3'- -UUCCGUGGG--------GUCCa-----UGUCCAAACauu -5' |
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33351 | 5' | -53.8 | NC_007605.1 | + | 151583 | 0.66 | 0.937244 |
Target: 5'- cGAGGCccugGCCguggCCAGGUACGGGcugGUGGg -3' miRNA: 3'- -UUCCG----UGG----GGUCCAUGUCCaaaCAUU- -5' |
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33351 | 5' | -53.8 | NC_007605.1 | + | 160134 | 0.67 | 0.90897 |
Target: 5'- -cGGCACCgCCAGGUgguuACAGGagacGUGGg -3' miRNA: 3'- uuCCGUGG-GGUCCA----UGUCCaaa-CAUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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