miRNA display CGI


Results 1 - 20 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33354 3' -60 NC_007605.1 + 22416 0.66 0.789562
Target:  5'- gGGGCCGcccGGgcuGCCGGGGUcccuccGGCUGgcCUGGGa -3'
miRNA:   3'- -CCCGGC---UC---UGGUUCCG------CCGAC--GACUC- -5'
33354 3' -60 NC_007605.1 + 13209 0.66 0.789562
Target:  5'- gGGGCCGcccGGgcuGCCGGGGUcccuccGGCUGgcCUGGGa -3'
miRNA:   3'- -CCCGGC---UC---UGGUUCCG------CCGAC--GACUC- -5'
33354 3' -60 NC_007605.1 + 25485 0.66 0.789562
Target:  5'- gGGGCCGcccGGgcuGCCGGGGUcccuccGGCUGgcCUGGGa -3'
miRNA:   3'- -CCCGGC---UC---UGGUUCCG------CCGAC--GACUC- -5'
33354 3' -60 NC_007605.1 + 34692 0.66 0.789562
Target:  5'- gGGGCCGcccGGgcuGCCGGGGUcccuccGGCUGgcCUGGGa -3'
miRNA:   3'- -CCCGGC---UC---UGGUUCCG------CCGAC--GACUC- -5'
33354 3' -60 NC_007605.1 + 31623 0.66 0.789562
Target:  5'- gGGGCCGcccGGgcuGCCGGGGUcccuccGGCUGgcCUGGGa -3'
miRNA:   3'- -CCCGGC---UC---UGGUUCCG------CCGAC--GACUC- -5'
33354 3' -60 NC_007605.1 + 28554 0.66 0.789562
Target:  5'- gGGGCCGcccGGgcuGCCGGGGUcccuccGGCUGgcCUGGGa -3'
miRNA:   3'- -CCCGGC---UC---UGGUUCCG------CCGAC--GACUC- -5'
33354 3' -60 NC_007605.1 + 57773 0.66 0.789562
Target:  5'- aGGGaUgGGGAUUAcuggagggggaAGGCGaGCUGCUGAa -3'
miRNA:   3'- -CCC-GgCUCUGGU-----------UCCGC-CGACGACUc -5'
33354 3' -60 NC_007605.1 + 2064 0.66 0.789562
Target:  5'- cGGGUCuAGGCCGAGcGCGGa-GCgUGGGu -3'
miRNA:   3'- -CCCGGcUCUGGUUC-CGCCgaCG-ACUC- -5'
33354 3' -60 NC_007605.1 + 16278 0.66 0.789562
Target:  5'- gGGGCCGcccGGgcuGCCGGGGUcccuccGGCUGgcCUGGGa -3'
miRNA:   3'- -CCCGGC---UC---UGGUUCCG------CCGAC--GACUC- -5'
33354 3' -60 NC_007605.1 + 19347 0.66 0.789562
Target:  5'- gGGGCCGcccGGgcuGCCGGGGUcccuccGGCUGgcCUGGGa -3'
miRNA:   3'- -CCCGGC---UC---UGGUUCCG------CCGAC--GACUC- -5'
33354 3' -60 NC_007605.1 + 77946 0.66 0.789562
Target:  5'- aGGGCCGGuGGCauuuGGGGuUGGgguagucaCUGCUGAGg -3'
miRNA:   3'- -CCCGGCU-CUGg---UUCC-GCC--------GACGACUC- -5'
33354 3' -60 NC_007605.1 + 158633 0.66 0.788678
Target:  5'- gGGGucugcgcaCCGAGacggcacGCCAGGGCGGCUaGCa--- -3'
miRNA:   3'- -CCC--------GGCUC-------UGGUUCCGCCGA-CGacuc -5'
33354 3' -60 NC_007605.1 + 68643 0.66 0.780663
Target:  5'- uGGCUcaGAGGCCGuacuGGCGGCcGCcucuucgGAGg -3'
miRNA:   3'- cCCGG--CUCUGGUu---CCGCCGaCGa------CUC- -5'
33354 3' -60 NC_007605.1 + 8327 0.66 0.780663
Target:  5'- cGGGCCaAGAUaGGGGCGcgauuGCUGCgaucugGAGg -3'
miRNA:   3'- -CCCGGcUCUGgUUCCGC-----CGACGa-----CUC- -5'
33354 3' -60 NC_007605.1 + 29971 0.66 0.771638
Target:  5'- uGGGcCCGAGuCCuugGAGGgGGCggaggGCUaGGGa -3'
miRNA:   3'- -CCC-GGCUCuGG---UUCCgCCGa----CGA-CUC- -5'
33354 3' -60 NC_007605.1 + 63380 0.66 0.771638
Target:  5'- uGGCUGAccuggucccgGACUuuGGGCGGCUGgUGGc -3'
miRNA:   3'- cCCGGCU----------CUGGu-UCCGCCGACgACUc -5'
33354 3' -60 NC_007605.1 + 14626 0.66 0.771638
Target:  5'- uGGGcCCGAGuCCuugGAGGgGGCggaggGCUaGGGa -3'
miRNA:   3'- -CCC-GGCUCuGG---UUCCgCCGa----CGA-CUC- -5'
33354 3' -60 NC_007605.1 + 17695 0.66 0.771638
Target:  5'- uGGGcCCGAGuCCuugGAGGgGGCggaggGCUaGGGa -3'
miRNA:   3'- -CCC-GGCUCuGG---UUCCgCCGa----CGA-CUC- -5'
33354 3' -60 NC_007605.1 + 20764 0.66 0.771638
Target:  5'- uGGGcCCGAGuCCuugGAGGgGGCggaggGCUaGGGa -3'
miRNA:   3'- -CCC-GGCUCuGG---UUCCgCCGa----CGA-CUC- -5'
33354 3' -60 NC_007605.1 + 61087 0.66 0.771638
Target:  5'- cGGCCGGGAagAAGG-GGCUGUgGAc -3'
miRNA:   3'- cCCGGCUCUggUUCCgCCGACGaCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.