miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33354 5' -58.6 NC_007605.1 + 68769 0.66 0.834645
Target:  5'- cGUgCAAGCAgCACCUGuCCCUgGGGGc -3'
miRNA:   3'- -CAgGUUCGUgGUGGGUcGGGAgCUCU- -5'
33354 5' -58.6 NC_007605.1 + 126082 0.66 0.826423
Target:  5'- -gUCGGGC-CCggACCCGGCCCg-GAGAc -3'
miRNA:   3'- caGGUUCGuGG--UGGGUCGGGagCUCU- -5'
33354 5' -58.6 NC_007605.1 + 133034 0.66 0.826423
Target:  5'- uUCCAGGCccugACUGCCCAGCa--CGGGGg -3'
miRNA:   3'- cAGGUUCG----UGGUGGGUCGggaGCUCU- -5'
33354 5' -58.6 NC_007605.1 + 85172 0.66 0.826423
Target:  5'- -aCCAccugaGGUGCCACCCguuccccggcagAGgCCUCGGGGg -3'
miRNA:   3'- caGGU-----UCGUGGUGGG------------UCgGGAGCUCU- -5'
33354 5' -58.6 NC_007605.1 + 45088 0.66 0.826423
Target:  5'- cGUCCGGGUggGCC-CCgaGGCUCUCGcAGAg -3'
miRNA:   3'- -CAGGUUCG--UGGuGGg-UCGGGAGC-UCU- -5'
33354 5' -58.6 NC_007605.1 + 10893 0.66 0.826423
Target:  5'- cUCCuuAGCcgaGCCGCCCGGCUcccggacgCUUGAGGg -3'
miRNA:   3'- cAGGu-UCG---UGGUGGGUCGG--------GAGCUCU- -5'
33354 5' -58.6 NC_007605.1 + 59071 0.66 0.818031
Target:  5'- -gCCGAGCcuCCACuCCcGCCCcCGGGGg -3'
miRNA:   3'- caGGUUCGu-GGUG-GGuCGGGaGCUCU- -5'
33354 5' -58.6 NC_007605.1 + 47059 0.66 0.818031
Target:  5'- -cCCAGGCaaggGCCGCuCUGGCCCgaucUGAGAc -3'
miRNA:   3'- caGGUUCG----UGGUG-GGUCGGGa---GCUCU- -5'
33354 5' -58.6 NC_007605.1 + 54203 0.66 0.818031
Target:  5'- gGUCCGGGagaGCCagACCCugauggcgaaGGCCCaCGAGAu -3'
miRNA:   3'- -CAGGUUCg--UGG--UGGG----------UCGGGaGCUCU- -5'
33354 5' -58.6 NC_007605.1 + 93490 0.66 0.817182
Target:  5'- aUCUAuAGcCACCAucuCCCAGCuucugcaCCUCGAGAu -3'
miRNA:   3'- cAGGU-UC-GUGGU---GGGUCG-------GGAGCUCU- -5'
33354 5' -58.6 NC_007605.1 + 129444 0.66 0.809475
Target:  5'- uGUCCAc-CGCCcuguGCUCGGCCCUaGAGAu -3'
miRNA:   3'- -CAGGUucGUGG----UGGGUCGGGAgCUCU- -5'
33354 5' -58.6 NC_007605.1 + 75633 0.66 0.808611
Target:  5'- uUCaCAAGCACCACCucaccuccuucuaCAGCCCccacagugacgCGGGGg -3'
miRNA:   3'- cAG-GUUCGUGGUGG-------------GUCGGGa----------GCUCU- -5'
33354 5' -58.6 NC_007605.1 + 21549 0.66 0.800764
Target:  5'- -cCCGAGguCCcagcACCCGGuCCCUcCGGGGg -3'
miRNA:   3'- caGGUUCguGG----UGGGUC-GGGA-GCUCU- -5'
33354 5' -58.6 NC_007605.1 + 54372 0.66 0.800764
Target:  5'- -cCCAGGCaACCGCCCcGCCCaggcuggccUCGGa- -3'
miRNA:   3'- caGGUUCG-UGGUGGGuCGGG---------AGCUcu -5'
33354 5' -58.6 NC_007605.1 + 133179 0.66 0.800764
Target:  5'- -cCCGgagAGCGCCAUCCuGCCagCGGGAg -3'
miRNA:   3'- caGGU---UCGUGGUGGGuCGGgaGCUCU- -5'
33354 5' -58.6 NC_007605.1 + 24618 0.66 0.800764
Target:  5'- -cCCGAGguCCcagcACCCGGuCCCUcCGGGGg -3'
miRNA:   3'- caGGUUCguGG----UGGGUC-GGGA-GCUCU- -5'
33354 5' -58.6 NC_007605.1 + 12342 0.66 0.800764
Target:  5'- -cCCGAGguCCcagcACCCGGuCCCUcCGGGGg -3'
miRNA:   3'- caGGUUCguGG----UGGGUC-GGGA-GCUCU- -5'
33354 5' -58.6 NC_007605.1 + 30756 0.66 0.800764
Target:  5'- -cCCGAGguCCcagcACCCGGuCCCUcCGGGGg -3'
miRNA:   3'- caGGUUCguGG----UGGGUC-GGGA-GCUCU- -5'
33354 5' -58.6 NC_007605.1 + 33825 0.66 0.800764
Target:  5'- -cCCGAGguCCcagcACCCGGuCCCUcCGGGGg -3'
miRNA:   3'- caGGUUCguGG----UGGGUC-GGGA-GCUCU- -5'
33354 5' -58.6 NC_007605.1 + 82168 0.66 0.800764
Target:  5'- -cCCAGGUGCCGCCCugAGCCa--GAGu -3'
miRNA:   3'- caGGUUCGUGGUGGG--UCGGgagCUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.