miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33354 5' -58.6 NC_007605.1 + 117745 0.69 0.637116
Target:  5'- cUCCAA-CACCAUCCAGCUCUCu--- -3'
miRNA:   3'- cAGGUUcGUGGUGGGUCGGGAGcucu -5'
33354 5' -58.6 NC_007605.1 + 14702 0.69 0.647168
Target:  5'- cUCCuaagaAGGCACCggucGCCCAGUCCUaccaGAGGg -3'
miRNA:   3'- cAGG-----UUCGUGG----UGGGUCGGGAg---CUCU- -5'
33354 5' -58.6 NC_007605.1 + 100048 0.69 0.617009
Target:  5'- aUCCAGGCAUUGCCUgaaauaGGCCCU-GAGGu -3'
miRNA:   3'- cAGGUUCGUGGUGGG------UCGGGAgCUCU- -5'
33354 5' -58.6 NC_007605.1 + 17771 0.69 0.647168
Target:  5'- cUCCuaagaAGGCACCggucGCCCAGUCCUaccaGAGGg -3'
miRNA:   3'- cAGG-----UUCGUGG----UGGGUCGGGAg---CUCU- -5'
33354 5' -58.6 NC_007605.1 + 65213 0.69 0.617009
Target:  5'- -aCCuguGCGCCgagguGCUgCAGCCCUCGAGGa -3'
miRNA:   3'- caGGuu-CGUGG-----UGG-GUCGGGAGCUCU- -5'
33354 5' -58.6 NC_007605.1 + 20840 0.69 0.647168
Target:  5'- cUCCuaagaAGGCACCggucGCCCAGUCCUaccaGAGGg -3'
miRNA:   3'- cAGG-----UUCGUGG----UGGGUCGGGAg---CUCU- -5'
33354 5' -58.6 NC_007605.1 + 23909 0.69 0.647168
Target:  5'- cUCCuaagaAGGCACCggucGCCCAGUCCUaccaGAGGg -3'
miRNA:   3'- cAGG-----UUCGUGG----UGGGUCGGGAg---CUCU- -5'
33354 5' -58.6 NC_007605.1 + 5733 0.69 0.627061
Target:  5'- uGUCCcccuAGCcCCggGCCCAGCCCUCcucAGAa -3'
miRNA:   3'- -CAGGu---UCGuGG--UGGGUCGGGAGc--UCU- -5'
33354 5' -58.6 NC_007605.1 + 157654 0.68 0.68718
Target:  5'- aGUCCAucgcccccAGCcCCAUCCgcGGCCCgCGGGAg -3'
miRNA:   3'- -CAGGU--------UCGuGGUGGG--UCGGGaGCUCU- -5'
33354 5' -58.6 NC_007605.1 + 40793 0.68 0.68718
Target:  5'- cUCCAGGUACCACCCA--CCUgGuGAc -3'
miRNA:   3'- cAGGUUCGUGGUGGGUcgGGAgCuCU- -5'
33354 5' -58.6 NC_007605.1 + 71570 0.68 0.697093
Target:  5'- --gCAAGCGCCGacaCCuGCCCcCGGGAg -3'
miRNA:   3'- cagGUUCGUGGUg--GGuCGGGaGCUCU- -5'
33354 5' -58.6 NC_007605.1 + 161276 0.68 0.697093
Target:  5'- -gCCugcuuGCGCaGCCCAGCCC-CGGGGg -3'
miRNA:   3'- caGGuu---CGUGgUGGGUCGGGaGCUCU- -5'
33354 5' -58.6 NC_007605.1 + 71331 0.68 0.697093
Target:  5'- cUCUAGGCACC-CUgggGGCCCUUGGGGc -3'
miRNA:   3'- cAGGUUCGUGGuGGg--UCGGGAGCUCU- -5'
33354 5' -58.6 NC_007605.1 + 136006 0.67 0.736136
Target:  5'- -gCCAGGCGugcagagccuCCACCUugGGUUCUCGAGGg -3'
miRNA:   3'- caGGUUCGU----------GGUGGG--UCGGGAGCUCU- -5'
33354 5' -58.6 NC_007605.1 + 62140 0.67 0.739015
Target:  5'- cGUCCuGGCcuuugacGCCGCCCggcuccggcuuuuggAGCCCUCaGGGGc -3'
miRNA:   3'- -CAGGuUCG-------UGGUGGG---------------UCGGGAG-CUCU- -5'
33354 5' -58.6 NC_007605.1 + 103562 0.67 0.782909
Target:  5'- aUCCGgcaAGCACCA-UCAGCCCggGGGGa -3'
miRNA:   3'- cAGGU---UCGUGGUgGGUCGGGagCUCU- -5'
33354 5' -58.6 NC_007605.1 + 140601 0.67 0.782909
Target:  5'- uGUCCcuuuGGguCUcaggACCCAGCCCUgGAGc -3'
miRNA:   3'- -CAGGu---UCguGG----UGGGUCGGGAgCUCu -5'
33354 5' -58.6 NC_007605.1 + 61121 0.67 0.773782
Target:  5'- aUCCGcgcGCGCCGuuuggCCGGCCCUCaGGGAc -3'
miRNA:   3'- cAGGUu--CGUGGUg----GGUCGGGAG-CUCU- -5'
33354 5' -58.6 NC_007605.1 + 115240 0.67 0.772862
Target:  5'- -cCCAccGGCGCUGCCCcggauguugcuggGGUUCUCGAGGg -3'
miRNA:   3'- caGGU--UCGUGGUGGG-------------UCGGGAGCUCU- -5'
33354 5' -58.6 NC_007605.1 + 60508 0.67 0.7636
Target:  5'- cUCCAAGCugCcCCCGucaagcgcgagauGUCCUcCGAGAg -3'
miRNA:   3'- cAGGUUCGugGuGGGU-------------CGGGA-GCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.