Results 61 - 69 of 69 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 33354 | 5' | -58.6 | NC_007605.1 | + | 93490 | 0.66 | 0.817182 |
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Target: 5'- aUCUAuAGcCACCAucuCCCAGCuucugcaCCUCGAGAu -3' miRNA: 3'- cAGGU-UC-GUGGU---GGGUCG-------GGAGCUCU- -5' |
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| 33354 | 5' | -58.6 | NC_007605.1 | + | 82168 | 0.66 | 0.800764 |
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Target: 5'- -cCCAGGUGCCGCCCugAGCCa--GAGu -3' miRNA: 3'- caGGUUCGUGGUGGG--UCGGgagCUCu -5' |
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| 33354 | 5' | -58.6 | NC_007605.1 | + | 33825 | 0.66 | 0.800764 |
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Target: 5'- -cCCGAGguCCcagcACCCGGuCCCUcCGGGGg -3' miRNA: 3'- caGGUUCguGG----UGGGUC-GGGA-GCUCU- -5' |
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| 33354 | 5' | -58.6 | NC_007605.1 | + | 30756 | 0.66 | 0.800764 |
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Target: 5'- -cCCGAGguCCcagcACCCGGuCCCUcCGGGGg -3' miRNA: 3'- caGGUUCguGG----UGGGUC-GGGA-GCUCU- -5' |
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| 33354 | 5' | -58.6 | NC_007605.1 | + | 24618 | 0.66 | 0.800764 |
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Target: 5'- -cCCGAGguCCcagcACCCGGuCCCUcCGGGGg -3' miRNA: 3'- caGGUUCguGG----UGGGUC-GGGA-GCUCU- -5' |
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| 33354 | 5' | -58.6 | NC_007605.1 | + | 21549 | 0.66 | 0.800764 |
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Target: 5'- -cCCGAGguCCcagcACCCGGuCCCUcCGGGGg -3' miRNA: 3'- caGGUUCguGG----UGGGUC-GGGA-GCUCU- -5' |
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| 33354 | 5' | -58.6 | NC_007605.1 | + | 18480 | 0.66 | 0.800764 |
|
Target: 5'- -cCCGAGguCCcagcACCCGGuCCCUcCGGGGg -3' miRNA: 3'- caGGUUCguGG----UGGGUC-GGGA-GCUCU- -5' |
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| 33354 | 5' | -58.6 | NC_007605.1 | + | 15411 | 0.66 | 0.800764 |
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Target: 5'- -cCCGAGguCCcagcACCCGGuCCCUcCGGGGg -3' miRNA: 3'- caGGUUCguGG----UGGGUC-GGGA-GCUCU- -5' |
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| 33354 | 5' | -58.6 | NC_007605.1 | + | 133034 | 0.66 | 0.826423 |
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Target: 5'- uUCCAGGCccugACUGCCCAGCa--CGGGGg -3' miRNA: 3'- cAGGUUCG----UGGUGGGUCGggaGCUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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