Results 1 - 20 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33354 | 5' | -58.6 | NC_007605.1 | + | 115469 | 1.08 | 0.001936 |
Target: 5'- uGUCCAAGCACCACCCAGCCCUCGAGAa -3' miRNA: 3'- -CAGGUUCGUGGUGGGUCGGGAGCUCU- -5' |
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33354 | 5' | -58.6 | NC_007605.1 | + | 162751 | 0.79 | 0.196951 |
Target: 5'- uGUUCAGGCACacggccgggGCCCGGCCCUCGcAGAg -3' miRNA: 3'- -CAGGUUCGUGg--------UGGGUCGGGAGC-UCU- -5' |
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33354 | 5' | -58.6 | NC_007605.1 | + | 113970 | 0.75 | 0.308364 |
Target: 5'- -aCCAGGCACCACCCcGUCCcagUGGGAu -3' miRNA: 3'- caGGUUCGUGGUGGGuCGGGa--GCUCU- -5' |
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33354 | 5' | -58.6 | NC_007605.1 | + | 166957 | 0.74 | 0.375952 |
Target: 5'- -aCCAGGCcuaGCCACCCcuGCCC-CGAGGa -3' miRNA: 3'- caGGUUCG---UGGUGGGu-CGGGaGCUCU- -5' |
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33354 | 5' | -58.6 | NC_007605.1 | + | 71243 | 0.73 | 0.417592 |
Target: 5'- uUCCuuguGCuCCugCCGGCCCcUCGAGAu -3' miRNA: 3'- cAGGuu--CGuGGugGGUCGGG-AGCUCU- -5' |
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33354 | 5' | -58.6 | NC_007605.1 | + | 125304 | 0.72 | 0.471085 |
Target: 5'- aGUCCGGGCACCGuCCCuGGCCCccuUgGAGu -3' miRNA: 3'- -CAGGUUCGUGGU-GGG-UCGGG---AgCUCu -5' |
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33354 | 5' | -58.6 | NC_007605.1 | + | 77791 | 0.72 | 0.487804 |
Target: 5'- -cCCAGGCACCACCagccaagcgucaGGCCCUgGAa- -3' miRNA: 3'- caGGUUCGUGGUGGg-----------UCGGGAgCUcu -5' |
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33354 | 5' | -58.6 | NC_007605.1 | + | 54045 | 0.72 | 0.499104 |
Target: 5'- uGUCCAGGCuccccucgagGCCGCCCuGGCCCgggcagcggcCGGGAa -3' miRNA: 3'- -CAGGUUCG----------UGGUGGG-UCGGGa---------GCUCU- -5' |
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33354 | 5' | -58.6 | NC_007605.1 | + | 104595 | 0.71 | 0.50861 |
Target: 5'- uUCCAgagaGGCGCaGCCCAGCCCUCc--- -3' miRNA: 3'- cAGGU----UCGUGgUGGGUCGGGAGcucu -5' |
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33354 | 5' | -58.6 | NC_007605.1 | + | 135781 | 0.71 | 0.51819 |
Target: 5'- aGUC--AGCGCCuGCCCcuCCCUCGAGAa -3' miRNA: 3'- -CAGguUCGUGG-UGGGucGGGAGCUCU- -5' |
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33354 | 5' | -58.6 | NC_007605.1 | + | 88681 | 0.7 | 0.575988 |
Target: 5'- aUCCucuGCACCAucauggucaucucCCCAGCCC-CGAGc -3' miRNA: 3'- cAGGuu-CGUGGU-------------GGGUCGGGaGCUCu -5' |
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33354 | 5' | -58.6 | NC_007605.1 | + | 69472 | 0.7 | 0.586949 |
Target: 5'- -gCCGAGCACCGgCCAGgCUUCcAGAg -3' miRNA: 3'- caGGUUCGUGGUgGGUCgGGAGcUCU- -5' |
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33354 | 5' | -58.6 | NC_007605.1 | + | 74844 | 0.7 | 0.596946 |
Target: 5'- gGUCCGGGCACuCAaaggucUCCGGCuCCUCaGGGAg -3' miRNA: 3'- -CAGGUUCGUG-GU------GGGUCG-GGAG-CUCU- -5' |
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33354 | 5' | -58.6 | NC_007605.1 | + | 65213 | 0.69 | 0.617009 |
Target: 5'- -aCCuguGCGCCgagguGCUgCAGCCCUCGAGGa -3' miRNA: 3'- caGGuu-CGUGG-----UGG-GUCGGGAGCUCU- -5' |
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33354 | 5' | -58.6 | NC_007605.1 | + | 100048 | 0.69 | 0.617009 |
Target: 5'- aUCCAGGCAUUGCCUgaaauaGGCCCU-GAGGu -3' miRNA: 3'- cAGGUUCGUGGUGGG------UCGGGAgCUCU- -5' |
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33354 | 5' | -58.6 | NC_007605.1 | + | 133663 | 0.69 | 0.627061 |
Target: 5'- -gUCAGGCACCugCCAGaCCUCcAGGc -3' miRNA: 3'- caGGUUCGUGGugGGUCgGGAGcUCU- -5' |
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33354 | 5' | -58.6 | NC_007605.1 | + | 5733 | 0.69 | 0.627061 |
Target: 5'- uGUCCcccuAGCcCCggGCCCAGCCCUCcucAGAa -3' miRNA: 3'- -CAGGu---UCGuGG--UGGGUCGGGAGc--UCU- -5' |
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33354 | 5' | -58.6 | NC_007605.1 | + | 117745 | 0.69 | 0.637116 |
Target: 5'- cUCCAA-CACCAUCCAGCUCUCu--- -3' miRNA: 3'- cAGGUUcGUGGUGGGUCGGGAGcucu -5' |
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33354 | 5' | -58.6 | NC_007605.1 | + | 20840 | 0.69 | 0.647168 |
Target: 5'- cUCCuaagaAGGCACCggucGCCCAGUCCUaccaGAGGg -3' miRNA: 3'- cAGG-----UUCGUGG----UGGGUCGGGAg---CUCU- -5' |
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33354 | 5' | -58.6 | NC_007605.1 | + | 17771 | 0.69 | 0.647168 |
Target: 5'- cUCCuaagaAGGCACCggucGCCCAGUCCUaccaGAGGg -3' miRNA: 3'- cAGG-----UUCGUGG----UGGGUCGGGAg---CUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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